Stenotrophomonas sp. WZN-1: CCR98_02730
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Entry
CCR98_02730 CDS
T04963
Name
(GenBank) RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
3.6.4.13
]
Organism
sten
Stenotrophomonas sp. WZN-1
Pathway
sten03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sten00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CCR98_02730
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sten03019
]
CCR98_02730
Messenger RNA biogenesis [BR:
sten03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CCR98_02730
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
HEM4
AAA_22
P-loop_SecA
AAA_19
Motif
Other DBs
NCBI-ProteinID:
ARZ73140
UniProt:
A0A1Z2LFP6
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All DBs
Position
complement(590818..592233)
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AA seq
471 aa
AA seq
DB search
MSFESLGLAPFLLRALAEQGYENPTPIQQQAIPLALAGRDLLAGAQTGTGKTAAFGLPLL
QHLGTASQEVRAGPRKPRALILAPTRELATQVHDSLRGYSKYLRIPSACIYGGVGMGNQL
DILRRGVDLLVACPGRLIDHLERRSVDLSGIEVLILDEADRMLDMGFLPSIKRILAKLPK
QNRQTLLFSATFEDNIRQLALEFMRNPEQIQVTPKNTVAETITHRVHPVDAGRKRDLLLH
LLAQDSREQTLVFARTKHGSDKLATFLEKSGIKTAAIHGNKSQGQRLRALGDFKAGRVTV
LVATDIAARGIDINELPKVINFDLPMVAEDYVHRIGRTGRNGATGQAISLVAQDEVKLLR
AIVRLLGRDMDIRDVPGFELQTPIRWGNSAPGKAEHDTGERAPRKSHARRPHGDAPRHAH
AGPKKAGGGRREGGGNGQQRAGAGQGQRRGGGGNGGGRGRGQGGNGGGRAG
NT seq
1416 nt
NT seq
+upstream
nt +downstream
nt
atgtcttttgaatcgctgggcctggcgcccttcctgctgcgcgcgctcgccgagcagggc
tacgaaaacccgaccccgatccagcagcaggcgatcccgctggcgctggccggtcgcgac
ctgctggccggcgcacagaccggcaccggcaagaccgccgccttcggcctgccgctgctg
cagcatctgggcaccgcctcgcaggaagtgcgtgccggcccgcgcaagccgcgtgcgctg
atcctggccccgacccgcgagctggccacccaggtgcatgacagcctgcgtggctacagc
aagtacctgcgcatccccagcgcctgcatctacggcggcgtcggcatgggcaaccagctg
gacatcctgcgccgtggtgtggacctgctggtggcctgcccgggccgcctgatcgaccac
cttgagcgtcgcagcgtcgacctgtccggcatcgaagtgctgatcctggacgaagccgac
cgcatgctcgacatgggcttcctgccgtcgatcaagcgcatcctggccaagctgccgaag
cagaaccgccagaccctgttgttctcggccaccttcgaggacaacatccgccagctggcg
ctggagttcatgcgcaacccggaacagatccaggtgacgccgaagaacaccgtggccgag
accatcactcaccgtgtgcacccggtcgatgccggccgcaagcgcgacctgctgctgcac
ctgctggcgcaggacagccgcgagcagaccctggtgttcgcccgcaccaagcacggcagc
gacaagctggccacgttcctggaaaagtcgggcatcaagaccgcggcgatccatggcaac
aagagccagggccagcgtctgcgtgcgctgggtgacttcaaggccggccgcgtgaccgtg
ctggtggccaccgacattgccgcgcgcggcatcgacatcaacgagctgccgaaggtgatc
aacttcgacctgccgatggtggccgaggactacgtgcaccgtatcggccgtaccggccgt
aacggtgcaaccggccaggcgatttcgctggtggcgcaggatgaagtgaagctgctgcgc
gcgatcgtgcgcctgctgggccgcgacatggacatccgcgacgtgccgggcttcgagctg
cagacgccgatccgctggggcaacagtgcgccgggcaaggccgagcacgataccggcgag
cgcgcaccgcgcaagagccacgcacgccgtccgcacggcgatgcgccgcgccatgcacat
gccggcccgaagaaggccggcggtggccgccgcgagggcggtggcaatggccagcagcgt
gcgggtgccggtcagggccagcgtcgtggcggtggcggcaatggtggcggccgtggccgc
ggccagggtggcaacggcggcggtcgcgccggctga
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