KEGG   Stenotrophomonas sp. WZN-1: CCR98_02730
Entry
CCR98_02730       CDS       T04963                                 
Name
(GenBank) RNA helicase
  KO
K11927  ATP-dependent RNA helicase RhlE [EC:3.6.4.13]
Organism
sten  Stenotrophomonas sp. WZN-1
Pathway
sten03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:sten00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    CCR98_02730
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sten03019]
    CCR98_02730
Messenger RNA biogenesis [BR:sten03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     CCR98_02730
SSDB
Motif
Pfam: DEAD Helicase_C ResIII HEM4 AAA_22 P-loop_SecA AAA_19
Other DBs
NCBI-ProteinID: ARZ73140
UniProt: A0A1Z2LFP6
LinkDB
Position
complement(590818..592233)
AA seq 471 aa
MSFESLGLAPFLLRALAEQGYENPTPIQQQAIPLALAGRDLLAGAQTGTGKTAAFGLPLL
QHLGTASQEVRAGPRKPRALILAPTRELATQVHDSLRGYSKYLRIPSACIYGGVGMGNQL
DILRRGVDLLVACPGRLIDHLERRSVDLSGIEVLILDEADRMLDMGFLPSIKRILAKLPK
QNRQTLLFSATFEDNIRQLALEFMRNPEQIQVTPKNTVAETITHRVHPVDAGRKRDLLLH
LLAQDSREQTLVFARTKHGSDKLATFLEKSGIKTAAIHGNKSQGQRLRALGDFKAGRVTV
LVATDIAARGIDINELPKVINFDLPMVAEDYVHRIGRTGRNGATGQAISLVAQDEVKLLR
AIVRLLGRDMDIRDVPGFELQTPIRWGNSAPGKAEHDTGERAPRKSHARRPHGDAPRHAH
AGPKKAGGGRREGGGNGQQRAGAGQGQRRGGGGNGGGRGRGQGGNGGGRAG
NT seq 1416 nt   +upstreamnt  +downstreamnt
atgtcttttgaatcgctgggcctggcgcccttcctgctgcgcgcgctcgccgagcagggc
tacgaaaacccgaccccgatccagcagcaggcgatcccgctggcgctggccggtcgcgac
ctgctggccggcgcacagaccggcaccggcaagaccgccgccttcggcctgccgctgctg
cagcatctgggcaccgcctcgcaggaagtgcgtgccggcccgcgcaagccgcgtgcgctg
atcctggccccgacccgcgagctggccacccaggtgcatgacagcctgcgtggctacagc
aagtacctgcgcatccccagcgcctgcatctacggcggcgtcggcatgggcaaccagctg
gacatcctgcgccgtggtgtggacctgctggtggcctgcccgggccgcctgatcgaccac
cttgagcgtcgcagcgtcgacctgtccggcatcgaagtgctgatcctggacgaagccgac
cgcatgctcgacatgggcttcctgccgtcgatcaagcgcatcctggccaagctgccgaag
cagaaccgccagaccctgttgttctcggccaccttcgaggacaacatccgccagctggcg
ctggagttcatgcgcaacccggaacagatccaggtgacgccgaagaacaccgtggccgag
accatcactcaccgtgtgcacccggtcgatgccggccgcaagcgcgacctgctgctgcac
ctgctggcgcaggacagccgcgagcagaccctggtgttcgcccgcaccaagcacggcagc
gacaagctggccacgttcctggaaaagtcgggcatcaagaccgcggcgatccatggcaac
aagagccagggccagcgtctgcgtgcgctgggtgacttcaaggccggccgcgtgaccgtg
ctggtggccaccgacattgccgcgcgcggcatcgacatcaacgagctgccgaaggtgatc
aacttcgacctgccgatggtggccgaggactacgtgcaccgtatcggccgtaccggccgt
aacggtgcaaccggccaggcgatttcgctggtggcgcaggatgaagtgaagctgctgcgc
gcgatcgtgcgcctgctgggccgcgacatggacatccgcgacgtgccgggcttcgagctg
cagacgccgatccgctggggcaacagtgcgccgggcaaggccgagcacgataccggcgag
cgcgcaccgcgcaagagccacgcacgccgtccgcacggcgatgcgccgcgccatgcacat
gccggcccgaagaaggccggcggtggccgccgcgagggcggtggcaatggccagcagcgt
gcgggtgccggtcagggccagcgtcgtggcggtggcggcaatggtggcggccgtggccgc
ggccagggtggcaacggcggcggtcgcgccggctga

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