Stenotrophomonas sp. WZN-1: CCR98_19650
Help
Entry
CCR98_19650 CDS
T04963
Name
(GenBank) type IV secretion protein Rhs
Organism
sten
Stenotrophomonas sp. WZN-1
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RHS_repeat
DUF6531
DUF4595
Motif
Other DBs
NCBI-ProteinID:
ARZ76287
UniProt:
A0A1Z2LPJ7
LinkDB
All DBs
Position
complement(4199053..4203759)
Genome browser
AA seq
1568 aa
AA seq
DB search
MLERLKTISCAALAMIALGSLAPWAAQAQEVQKKWESYLSMGQPRATEAAVQKDIKSLFS
QYEKDKPFDWHVKRQRVLGKKVIYDYRVRPEKIVTTDWVYTHSGQEYSSEDQIRSVILAT
RVSDPQCPATSLTEDPWVELLGLGRGDDGSVTNEEKNFHYTLNFYHQSTQECSSIVGWEH
VRRARTALCPNRPSLTWNEALQMCSLVQQDEPHMSPMLSYTSGPLPPQQCPVGNPCDPTT
GDKSQPEPDFNLGWVSFQRHYHSLTSTAGGALGTGWTHSHNLRLTTGVDDSTFPPSSELK
VGLIGADGGQTAFQKVGASYEAMDGSGDRAVQQGTNWQLSRAGERIYFDADGLMQRRDLE
DGTSLTYAHDSRGRLLSITHSTGRRVDVQYLAPGDDSLISALVIAGQPVVSYAYSPAGEL
ITATYADGASRTYHYEDTRFPGYLTGVTAEDTRRYSWFGYDAKGRVTCSRHSGDCSQADV
GIDGVRLEYTPAGTTIVTDALGKQSAYALTASGSSGLPRKVNGITESNGSISRTYLPEGT
DFRRRLQSVTDRRGVVTQYAYAEASDAAAGAVSVTTTTEAAGTPDQRVSETRVAMDSNRL
VQQAVGNREIRIARNARLQPTTIAVRDMVTGDTRVTTQTYCEAEGPECPLVGLLRSVDGP
RSDVADVSTYAYYTADDAGCAANGACSYRKGDLRSVTNALGQTVETLAYDALGRPLSIKD
ANGVVTDYTYHARGWPTSVTVRGATTAEDRATQISYWPTGQVQQVTEPDGNSVTYVYDAA
QRLTDIADSAGNTIHYTLDNAGNRLKEDTLDAGGTLRRTLARTFNTLGQLTALKDAGNHA
TGFAYDANGNPQTVTDALQRVTSQQYDPLNRLAQTLQDVGGVAAEIRSQYNALDQVTQVT
DPKGLHTTYAYNGFGDLTGQVSPDSGASSFTVDAAGNRKTATDARGITATYHYDALNRLI
GIAYPDPNLDVGYSYDVAPTACATDERFAKGRLGQVLHANGSTQYCHDRFGQVTRKVQTV
NGVASTLRYAYSKSGRLTALTYPDGSVADYVRDTQGRISQIGLTRPGQARQIVVNNVTYA
AFGPATGWTYGNGRQLQRPLDLDYRPQAVHDPAAGGLSLGYGYDPVGSITELKKGAGSTV
LAKYAYDTLGRLTQTQDGATGTPIETYAYDATGNRTALTTSAGTASYTYPATSHRLTAVD
GEARNHDAVGNTTSIGGKTFIYNDANRMNAVKQGNAVLESYGYNHRGERVLRTPAGGAAR
ITLYDEAGQWLGNYSATGQAQQQAIWLDNYPVALINVPGTGVPELAYVQPDHLGTPRVVI
DPVRDVAIWEWSNKSEVFGNQIPSADPDGDGVAFELALRFPGQQATDASGLFYNYQREYD
PAAGRYSQSDPMGFDGGVSTFSYVSADPVQAVDPLGLLANCTCVDGGVHIDIPIRFSGEG
ATPETLRKMINAIESTWSAPGFTVTVSQPEKGRLNRVEVPLGRGVSTVTGGSVGKWYAGN
TEWTAAHEAGHLMKFKYDGRFDMYDVVSQAPSRSTKPVPGWEGNIMAEHLGVPDDRVRDA
IKKRLGCK
NT seq
4707 nt
NT seq
+upstream
nt +downstream
nt
atgttggaacgactgaagaccatttcgtgtgccgcactggcgatgatcgcgctggggagc
ttggctccttgggctgcgcaggcgcaggaggtgcagaagaagtgggagagctacctgtcg
atgggccagccgcgagccacggaagcggcggtgcagaaggacatcaagtcgctcttttcc
cagtacgagaaggacaaacccttcgattggcatgtcaaacgccaacgcgtccttggaaag
aaggtcatctacgattaccgggtgagacccgagaagatcgttactactgactgggtctac
acccactcagggcaggagtactcatccgaagatcagattcgtagcgtgatcctcgctacc
cgcgtcagcgacccgcagtgcccggcgacttcactcacggaggatccttgggtggagctc
cttggacttggcaggggcgacgacggtagcgtcaccaacgaggagaaaaatttccattac
accttgaacttctatcaccagagcactcaagaatgctcgtcgatagtggggtgggagcat
gtgcgccgggccagaacggcgctttgcccgaatcgaccgtccctgacgtggaatgaggcc
ctgcagatgtgctctctggtccagcaggacgagccgcacatgtcgcccatgctctcctac
acaagcgggccgctgccgccgcagcagtgtcctgttggtaacccgtgtgatccgaccact
ggcgataaatcccagcctgagccggatttcaaccttggatgggtgagcttccaacgccac
tatcactccctgacaagcacggcgggcggcgcgttgggtacgggctggacccattcccac
aatctgcggcttaccacaggcgtagacgattccaccttccctcccagctccgaactgaaa
gttgggctgatcggcgccgatggcgggcagaccgcattccagaaagtgggggccagctac
gaagccatggacggaagcggcgaccgcgcggtccagcagggcaccaactggcaactttca
cgtgccggagagcgcatttattttgatgctgatggcttgatgcagcgccgtgatctcgaa
gacggtacttcgctgacctatgcacacgacagccgcggccgcctgctcagcatcacccat
tcaaccggtcggcgcgtggatgtccagtacctcgcgccgggcgacgattcactgatctcg
gccctggtgatcgccggccagcctgtggtgagctacgcctactccccggccggggaattg
atcactgcgacctatgcagacggtgctagccgtacgtatcactatgaggacacccgcttc
ccgggctacctgaccggcgtgaccgccgaagacacccggcgctacagctggttcggctac
gacgccaaggggcgggttacctgcagccgccattccggcgattgcagtcaggccgacgta
ggcattgatggcgtgcgtctggagtacaccccggcaggcaccaccatcgtcaccgacgca
ctgggcaagcagagtgcctacgcattgaccgccagcggcagcagtggccttccgcgcaag
gtcaatggcatcaccgagagcaatggcagcatcagccgcacctatctgcccgagggcacc
gatttccggcgtcgcctgcagtcggtgaccgatcgccgaggcgtcgtcacccagtacgcc
tatgcggaggccagcgatgctgccgctggcgccgtcagcgtgaccactaccaccgaagcg
gccggcactccggatcagcgtgtcagcgagacgcgcgtggccatggacagcaatcggctg
gtgcagcaggccgtcggtaaccgtgagatccgcatcgcgcgtaatgcgcgcctccagccg
accaccatcgccgtgcgcgacatggtgaccggtgacacccgcgtcaccacgcagacctac
tgtgaggccgagggcccagagtgcccgctggtgggactgctgcgtagcgtggatggcccg
cgcagtgatgtggcggatgtctccacctacgcctactacaccgcggacgacgcgggatgc
gcggccaatggtgcctgcagttatcgcaagggcgacctgcgcagtgtgaccaatgcgctc
ggccagacggtcgagaccttggcctacgacgcactcggaaggccgctgtcgataaaggac
gccaacggcgtggtcaccgactacacctaccatgcccgcggctggccgacctcggtcacc
gtgcgcggcgcaaccacagccgaggaccgggctacccagatcagctactggccgaccggc
caagtgcagcaggtcacagagcccgacggcaacagcgtcacctacgtctacgacgccgcg
cagcggctgacggacatcgccgacagcgctggcaacaccatccactacacgctggacaat
gccggcaatcgcctcaaggaagacacgctcgatgcaggcgggacgctgcgccgtaccctg
gcacggacgttcaacacgctcggccagctgaccgcactgaaggacgcaggcaaccacgct
accggctttgcctacgatgccaacggcaacccgcagaccgtgaccgacgccctgcagcgc
gtgaccagccagcagtacgacccgctgaaccgcctggcccagaccctgcaggacgtgggt
ggcgtggccgccgagatccgcagccagtacaacgcgctggaccaggtcacgcaggtcact
gacccgaagggcctgcataccacctacgcctacaacggattcggtgacctgaccgggcag
gtcagcccggacagtggcgccagcagcttcaccgtggacgccgccggcaaccgcaagacg
gccaccgatgcacgcggcatcactgccacctatcactacgatgcactcaaccgcctgatc
ggcatcgcctacccggaccccaatctggacgtgggctacagctatgacgtggcaccgact
gcctgtgccaccgacgagcgctttgcgaaggggcgactggggcaggtgctgcatgccaat
ggcagcacccagtactgccatgaccgcttcggccaggtcacccgcaaggtgcagaccgtc
aatggtgtggccagcacactgcgctatgcctacagcaagtcgggtcgcctgactgcgttg
acctaccccgacggcagcgtggccgactacgtgcgcgatacccagggccgcatcagccag
atcggcctgacccgccccggccaggcgcgccagatcgtggtgaacaacgtgacctatgcg
gccttcggcccggcgaccggctggacctacggcaacggccgccagctgcagcgtccgctg
gatctggattaccgcccgcaggcggtgcatgacccggccgcaggcggcctgtcgctgggc
tacggctacgacccggtcggttcgatcaccgagctgaagaagggcgcaggttcgacggtg
ctggccaagtacgcctacgacacgctgggccgcctgacccagacccaggacggcgcgacc
ggcacgccgattgaaacctatgcctacgacgccaccggcaatcgcaccgcgctgaccacc
tcggcaggcaccgccagctacacctaccccgcaaccagccaccggctgaccgccgtggac
ggcgaagcgcgcaaccatgacgcggtgggcaacaccaccagcatcggcggcaagacgttc
atctacaacgatgccaaccgcatgaacgcggtgaagcagggcaatgccgtactggaaagc
tacggttacaaccaccgcggtgaacgcgttctgcgtaccccggccggtggcgcagcacgg
atcaccttgtacgacgaagcagggcagtggctgggcaactactcggccacggggcaggcg
cagcagcaggccatctggctggataactacccggtggcgctgatcaacgtgccgggcacc
ggcgtgccggaacttgcctacgtccaaccagatcatctgggcacgccgcgcgtggtgatc
gatccggtacgggacgtcgcgatctgggagtggagcaacaagagtgaggtgttcggtaac
cagattccgagtgctgatccggatggcgatggtgtggcgttcgagctggcgctgcgattc
ccgggccagcaggccacggatgcgagtgggttgttctacaactaccagcgggagtatgac
ccggcagcggggcgctattcgcagagtgatccgatgggattcgacgggggggtatctacc
ttctcctatgtatcagctgatccagtgcaggcggttgatccgctcggactgctggccaat
tgcacttgcgtggacggtggagttcatatcgacatccctattcgcttcagtggtgaggga
gctactcctgagactttgagaaaaatgataaatgcaattgaatcgacctggtctgcgccc
ggatttacagtgactgttagccagccggagaaaggtcggttaaaccgtgttgaggttccg
ctggggaggggggtttcgaccgtaactggaggcagtgtcggtaaatggtatgcaggaaac
actgagtggacggctgcgcacgaagcagggcatttgatgaaattcaagtacgatggtcgt
tttgatatgtacgatgtggtgtcgcaggcgccatctcgttctactaagcccgttccgggg
tgggagggaaacatcatggcagagcatcttggcgttccagacgatagggttcgggacgct
atcaagaagcggttggggtgcaaatga
DBGET
integrated database retrieval system