Sphingopyxis terrae: AOA14_00110
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Entry
AOA14_00110 CDS
T04307
Name
(GenBank) excinuclease ABC subunit B
KO
K03702
excinuclease ABC subunit B
Organism
ster
Sphingopyxis terrae
Pathway
ster03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ster00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AOA14_00110
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ster03400
]
AOA14_00110
DNA repair and recombination proteins [BR:
ster03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
AOA14_00110
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
AOA14_00110
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
UvrB
Helicase_C
ResIII
UVR
DEAD
AAA_30
UB2H
AAA_16
DUF87
SWI2_SNF2
AAA_33
Kinesin
DUF2963
AAA_22
FATC
AAA
Microtub_bd
Motif
Other DBs
NCBI-ProteinID:
AMU93013
UniProt:
A0A142VT98
LinkDB
All DBs
Position
21074..23260
Genome browser
AA seq
728 aa
AA seq
DB search
MAIQIRTSLDEIDTAQDYVPHRPARPDKVEGGKRFELVSDYSPAGDQPTAIRELVDTARE
GERDQVLLGVTGSGKTFTMAKVIEELQRPALILAPNKILAAQLYGEFKSFFPNNAVEYFV
SYYDYYQPEAYVPRSDTYIEKESSVNEAIDRMRHSATRALLERDDVIIVASVSCLYGIGS
VETYSAMIFDLKKGQVVDSGEIIRKLVALQYKRNDQAFARGNFRVRGDSLEIFPSHYEDM
AWRVSFFGDEIEEITEFDPLTGKKIASLNYVRVYANSHYVTPGPTLKQATEAIRHELAER
LKELETEGRLLEAQRLEQRTNFDLEMIAATGSCAGIENYSRFLTGRLPGEPPPTLFEYLP
DNALLFVDESHQTIPQIGAMSKGDHRRKITLAEYGFRLPSCIDNRPLRFAEWDMMRPQTV
SVSATPGTWEMDRTQGVFAEQVIRPTGLIDPPVEIKPVEEQVDDLIAEAKKTAAAGYRTL
VTTLTKRMAEDLTEFLHEAGLKVRYMHSDVETLERIEIIRDLRLGVFDVLVGINLLREGL
DIPECGLVAILDADKEGFLRSETSLVQTIGRAARNVDGRVILYADRITGSMERALRETDR
RRAKQQAYNEEHGITPTTIKRNIGDIIAHVASKDQVTIDLGDDKPQHMVGHNLRAYIQEL
EKKMRDAAADLEFEEAGRLRDEIRRLEADELGLPADEQVAPRVGRSNEGKPGTRKGRFGK
QSKTKWGR
NT seq
2187 nt
NT seq
+upstream
nt +downstream
nt
atggcaattcagattcgcacctcgctcgacgaaatcgacacggcgcaggactatgtgccg
caccgtcccgcccgccccgacaaggtggagggcggcaagcggttcgaactggtcagcgac
tattccccggcgggcgatcagccgaccgcgatccgcgagctggtcgataccgccagggag
ggcgagcgcgatcaggtgctgctcggcgtcacgggatcgggcaagaccttcaccatggcg
aaggtgatcgaggagttgcagcgcccggcgctgatcctcgcgcccaacaagatcctcgcg
gcgcagctctatggcgagttcaagagcttctttccgaacaatgcggtcgaatatttcgtc
agctattacgactattaccagcccgaggcatatgtgccgcggtccgacacctatatcgag
aaggaaagcagcgtaaacgaggcgatcgaccgcatgcgccactcggcgacgcgcgcgctg
ctcgaacgcgacgacgtcatcatcgtcgcctcggtatcgtgcctttacggcatcggatcg
gtcgagacttattcggcgatgatcttcgatttgaagaaggggcaggtcgtcgacagcgga
gagattatccgcaagctcgtcgcgctccagtacaagcgcaacgaccaggcgttcgcgcgc
ggcaatttccgcgtccggggcgacagcctcgaaattttcccatcgcactatgaggacatg
gcgtggcgcgtcagcttcttcggtgacgagatcgaggagatcaccgaattcgatccgctg
accggcaagaagatcgccagcctcaactatgtgcgcgtctatgccaacagccactatgta
acacccggtccaacgctgaagcaggcgaccgaagcgatccgccacgaactcgccgagcgg
ctgaaggaactcgaaaccgagggccggctgctcgaagcgcagcggctcgaacagcggaca
aatttcgacctcgaaatgatagccgcgaccggaagctgtgcagggatcgaaaattacagc
cgcttcctgaccggccgcctgccgggcgagccgccgccgaccttgttcgaatatctgccc
gacaatgccttgctgttcgtcgatgaaagccaccagacgattccgcagatcggcgcgatg
tcaaagggcgaccatcgccgcaagatcactctcgccgaatatggctttcggctgccgtcc
tgcatcgacaaccggcccttgcgcttcgccgaatgggacatgatgcggccccagacggtc
agcgtgtcggcaaccccggggacgtgggaaatggaccgcacccagggcgttttcgccgag
caggtgatccgcccgaccgggctgatcgatccgccggtcgagatcaagccggtcgaggag
caggtcgacgatctgatcgccgaggcgaagaaaactgccgcggcgggctatcgcaccctc
gtcactacgctcaccaagcgcatggccgaggatctgaccgagttcctccacgaagcggga
ctgaaggtccgctacatgcacagcgacgtcgaaacgctcgagcgcatcgagatcattcgc
gacctcaggctcggcgtgttcgacgtgctcgtcggcatcaacctcttgcgcgaaggcctc
gacattcccgaatgcgggctcgtcgcgatcctcgacgccgacaaggaggggttcctgcgc
agcgaaaccagcctcgttcagacgatcggccgcgccgcgcgcaacgtcgatggccgcgtc
atcctctatgccgaccgcatcaccggcagcatggaacgcgcgctgcgcgaaaccgaccgc
cgccgcgccaagcaacaggcgtataacgaagaacacggcatcacgccgacgacgatcaag
cgcaacatcggcgacatcatcgcgcatgtcgcgtcgaaggatcaggtcaccatcgacctc
ggcgacgacaagccgcagcacatggtcggccacaacctccgcgcctatatccaggagctg
gaaaagaagatgcgcgacgccgccgccgacctggaattcgaggaagccggtcgcctgcgc
gacgaaatccgccgcctcgaagccgacgaactcggcctgcccgcggacgaacaggtcgcc
ccgcgcgtcggccgctcgaacgagggcaagccgggtacgcgcaaggggcgcttcgggaag
cagagcaagacgaagtgggggcgttaa
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