KEGG   Sphingopyxis terrae: AOA14_14085Help
Entry
AOA14_14085       CDS       T04307                                 

Definition
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
ster  Sphingopyxis terrae
Pathway
ster03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:ster00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    AOA14_14085
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ster03400]
    AOA14_14085
Enzymes [BR:ster01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     AOA14_14085
DNA repair and recombination proteins [BR:ster03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     AOA14_14085
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_M DNA_ligase_A_C RNA_ligase DNA_primase_S
Motif
Other DBs
NCBI-ProteinID: AMU95739
UniProt: A0A142W185
LinkDB All DBs
Position
2957753..2960260
Genome map
AA seq 835 aa AA seqDB search
MTRADPLAQYNKKRDFKLTPEPAGKVAKGGGNRFIVQKHDATRLHYDFRLEVDGVLKSWA
VTKGPSANPDDKRLAVRTEDHPMAYADFEGVIPKGEYGGGSVMLWDRGTWAPVAGKSAKD
LEKGHLHFTLDGERMKGEWLLVRMKPRAGEKRENWLLRKIDDAYAGGSDDLTGRYLTSVL
TDRPMAEIAGDEDGEQSLKGAKGEAFAKKMAAAAAHNRKVAKGSKAGAKPPKFRKLQLAT
LVDSVPAGNNWFYEIKFDGYRALVAAAGDQVVVYTRSGLDWTDKFAPLARHIAALDLPPC
LIDGEIVAYGKDGNPDFSSLQAVLKRGHGAQDEATDLHFFAFDLLEENGKSLTALGNLER
KERLEALLRDAAPPIAVADHVIGAGEKLYEAMCGAGQEGIIAKRADAPYAGRRSKNWVKV
KCTRRQEFIIVGWKESSAKARPFGSLLLAQREKGELVYKGNVGTGFDADTMAMLAAKFAG
RARKTAPVDVDKAAARKVHWVRPDLVAEIAFAEYTASGSVRHASFVGLRADKEAKDVKPE
TKAKAPSPVSDVKISSRDRVIFPEAKATKGDLADYYAAVAPVMLPHLARRPASLVRCPQG
RAKQCFFQKHDSGSFGPHVHHVPIEEKDGGVEDYLYVEDADGILACVQMGTIEFHGWGSH
VDTLEQPDRMVFDLDPDEGLDFADVKKAAADLKRQLADIGLVSFAMLSGGKGVHVVVPLD
PGHSWDAHKDFAKRFAEAMSLAEPDRFVATMSKAKRKGKIFIDWLRNQRGSTAIMPYSAR
ARAGAPVAVPIDWDGLAAIDSARHWTIADARALLDRAASPTLKGWGFARQTLPAI
NT seq 2508 nt NT seq  +upstreamnt  +downstreamnt
atgacccgtgccgaccctctcgcccaatataacaagaagcgcgatttcaagctgaccccc
gaacccgcgggcaaggtcgcgaaggggggcggcaatcgcttcatcgtccagaaacacgac
gcgacgcgcctccattacgacttccggctcgaagtcgatggcgtgctcaagagctgggcg
gtcaccaaggggccgagcgcgaaccccgacgacaagcggctcgcggtgcgcaccgaagat
catccgatggcctatgccgatttcgagggggtgatccccaagggcgaatatggcggcggt
tcggtgatgctgtgggatcgcggcacctgggcgccggtcgcggggaagagcgcgaaggat
ctggaaaagggccatcttcacttcaccctcgacggcgagcggatgaagggcgaatggctg
ctcgtccgcatgaagcctcgcgccggtgaaaagcgcgagaactggctgcttcgcaagatc
gacgacgcctatgcggggggcagcgacgacttgaccggccgctacctcaccagcgtcctc
accgatcgcccgatggccgagatcgcgggcgacgaagacggcgagcaatcgctgaagggc
gcaaagggcgaagcgttcgcgaagaagatggcggcagcggcggcgcacaatcgcaaggtc
gccaaaggctcaaaagccggcgccaagccgcccaaattccgcaagctgcagctggcgacg
ctcgtcgacagcgtgccggccggcaacaactggttctacgagatcaagttcgacggttat
cgcgcgctcgtcgccgcggcgggggatcaggtcgtcgtctacacgcgcagcgggctcgac
tggaccgacaagttcgccccgctcgcccgccatatcgccgcgctcgacctgccgccgtgt
ctgatcgacggtgagatcgtcgcctatggcaaggacggcaaccccgacttctcctcgctc
caggcagtcctgaaacgcggccacggcgcgcaggacgaggcgaccgacctgcatttcttc
gccttcgacctgctcgaagagaacggcaagtcgctcaccgcactcggcaatctagaacgc
aaggaacgtctcgaggcgctgctccgcgatgcagcgccgccgattgcggtcgccgatcat
gtcatcggcgcgggcgaaaagctctatgaggcgatgtgcggcgcagggcaggagggcatc
atcgccaagcgcgccgatgcaccctatgccggccgccggtcgaaaaactgggtgaaggtc
aaatgcacccgccgccaggaattcatcatcgtcggttggaaggagagttcggcgaaggca
cgtcccttcggctcgctacttctcgcgcagcgcgaaaagggcgagcttgtctacaagggc
aatgtcggcaccggcttcgatgccgatacgatggcgatgctcgcggcgaagttcgcgggc
cgcgcgcgcaagacggcgccggtcgatgtcgacaaggcggcggcgcgcaaggtccattgg
gtaaggcccgaccttgtcgccgagatcgctttcgccgaatataccgccagcggctcggtc
cgccacgcaagcttcgtcgggctgcgcgccgacaaggaggcgaaggacgtgaaacccgaa
accaaggccaaggctcccagcccggtcagcgacgtgaagatcagcagccgcgaccgcgtc
atcttccctgaggcaaaggcgacgaagggcgacctcgccgactattatgccgcggtggcg
ccggtcatgctcccccacctcgcgcgccgcccggccagcctggtccgctgtccgcaggga
cgcgcgaagcaatgcttcttccagaagcatgattcaggctctttcggcccgcacgtccac
cacgttccgatcgaagagaaggacggcggcgttgaggattatctctatgtcgaggatgcg
gacggcatcctcgcctgcgtccagatggggacgatcgaatttcacggctggggcagccac
gtcgatacgctcgaacagccggaccgcatggtcttcgacctcgaccccgacgaagggctc
gacttcgccgacgtcaaaaaggccgcggcggatttgaagcgccaactcgccgacatcggc
ctcgtcagcttcgcgatgctctccggcggcaagggcgtccatgtcgtcgtgccgctcgat
ccggggcacagctgggacgcgcacaaggattttgcgaagcgctttgccgaggcgatgagc
cttgccgaacccgatcgtttcgtcgcgacgatgagcaaggcaaagcgcaagggaaagatc
ttcatcgactggctgcgcaaccagcgcggcagcaccgcaatcatgccctattcggcgcgg
gcgcgggctggggcgcccgtggcggttcccatcgattgggacgggctggccgccatcgac
agcgcgcgccactggacgatcgcagacgcccgcgccttgctcgatcgcgccgcgagcccg
acgctgaagggatggggatttgcgcggcagacgctgcccgcgatctga

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