KEGG   Symbiobacterium thermophilum: STH1797Help
Entry
STH1797           CDS       T00196                                 

Definition
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
sth  Symbiobacterium thermophilum
Pathway
sth03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:sth00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    STH1797
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:sth03400]
    STH1797
Enzymes [BR:sth01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     STH1797
DNA repair and recombination proteins [BR:sth03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     STH1797
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_C
Motif
Other DBs
NCBI-ProteinID: BAD40782
UniProt: Q67NG1
LinkDB All DBs
Position
complement(1940227..1941165)
Genome map
AA seq 312 aa AA seqDB search
MRLPFPPMLLERAEAPFADDDWVYQVKWDGVRNLTLVEGGRVRHWSRRLRERTALFPEFD
GLAAALPGRRAVLDGEIIVLQDGRPSFSAVLERDLAGSTAGAARRRPATLMLFDLLEWDG
RELYDVPLAERLALLEAVVPPDEAWQVVSSFPGSDGPALYAAAVARGLEGVVAKRRASRY
VPGARSRDWLKVKRRSEMLAVVVGYTNPTGRPGGLLLGAYRDGRLRYIGRVGSGLSGADL
AAIRHHLPSGPCPLAEIPRLRERFGGDPGPVVWVEPLLTVRVSFTEWTEEGRLRDPVVVG
FSAEPPEAAVIP
NT seq 939 nt NT seq  +upstreamnt  +downstreamnt
gtgcggctgcccttcccgcccatgctgctggagcgcgccgaggccccctttgcggacgac
gactgggtctatcaggtgaagtgggacggcgtgcggaacctgacgctggtggagggcggt
cgggtgcgccactggagccgtcggctgcgggagcgcacggcgctgttccccgagttcgac
ggcctggccgcggccctccccgggcggcgggccgtgctggatggcgagatcatcgtgctg
caggacggtcggccgagcttctcggccgtgctggagcgggacctggcgggcagcacggcg
ggggcggcccgaaggcggccggccaccttgatgctcttcgatctgctggagtgggacggc
cgggagttgtacgacgtgcccctggccgagcggctggcgctgctggaggcggtggttccg
cccgacgaggcgtggcaggtggtctcgtccttcccgggcagcgatgggccggcgctctac
gcggccgccgtggccagggggctggagggggtcgtggccaagcggcgtgccagccggtac
gtgccgggggcgcgcagccgcgactggctgaaggtcaagcgccggtcggagatgctggcc
gtggtggtgggctacaccaacccgaccggccgcccgggcgggctgctgctgggcgcctac
cgggacgggcggctccgctacatcggccgggtaggctcggggctgagcggcgcggacctg
gccgcgatccggcaccacctgccgtccggcccgtgccccctcgcggagattccgaggctc
cgggagcggttcggcggcgaccccggaccggtggtgtgggtggagcccctcctcacggtg
cgggtgagcttcaccgagtggaccgaggaggggcggctgcgggacccggtggtggtcggg
ttttcggccgagccgccggaggcggcggtgatcccgtaa

DBGET integrated database retrieval system