Sphingobacterium thalpophilum: NCTC11429_04714
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Entry
NCTC11429_04714 CDS
T06778
Symbol
rhlE_3
Name
(GenBank) ATP-dependent RNA helicase rhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
stha
Sphingobacterium thalpophilum
Pathway
stha03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
stha00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NCTC11429_04714 (rhlE_3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
stha03019
]
NCTC11429_04714 (rhlE_3)
Enzymes [BR:
stha01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NCTC11429_04714 (rhlE_3)
Messenger RNA biogenesis [BR:
stha03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NCTC11429_04714 (rhlE_3)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
ResIII
AAA_11
AAA_22
FBXL18_LRR
Motif
Other DBs
NCBI-ProteinID:
VTR52981
UniProt:
A0A4U9W2T8
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All DBs
Position
1:5334040..5335332
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AA seq
430 aa
AA seq
DB search
MSLEKLKLSKRLTATMTELGYLAPKEIQSRCISRILGGQDVIAIAPEGAGKTTTYVLSTL
TKLKFTDDEAPKFLILAPNEERIDEIVEKFYQLSKNKQLRIIGLRAGGSMEDEIEELVEG
KDIVVATPNRARAIYLKLALNLNRIQALIIDDAEEIIKQGMQTAVRELAESCGKVQHLVF
STVEHQKLYDMIDDHLNENYAVVEVEELENETVDTLDLLLYHVPNFTTKINLLNLLLEDK
EVFQKVVVFVNSKLTAQKLAKSLFHQNEEEIAILNPLFYDDFGFDSVADFKASDASRALI
IARENSPEVDLADIPFIFQFELPNEKEQFLQYLVKDNSNAETVVLTFSTDLELPMVRKIE
QVIGKRMDILDLPEDLVIYNPSADNKKRKTNSIAENDESRGGAFHQKKESNAKNYNYGGG
EKAKMKMKKK
NT seq
1293 nt
NT seq
+upstream
nt +downstream
nt
gtgtcgttagagaaactaaaattaagcaagagactaactgctaccatgaccgaactcggt
tatctggctccgaaagagattcagagtagatgcatttccaggattcttggtggacaggat
gtgatcgccatagcacctgaaggggctggcaagaccacaacttacgtattatcgaccttg
actaaattaaaatttacggacgatgaggcccccaagttcttgatcctggcacccaacgaa
gagcgcattgacgagattgttgaaaaattctaccagctcagcaaaaataagcaactacgt
atcattgggctgcgtgccggcggaagtatggaagatgagatcgaagagctcgtggaaggc
aaagacatcgtcgtcgcaacaccaaaccgggcccgggcgatttatctgaaactggcattg
aacctcaatcgtatccaggccttaattattgatgatgccgaagaaatcatcaagcaaggc
atgcagaccgctgttcgggagctggcagaaagctgcggcaaagtgcagcacctggttttt
agtacagtggaacatcaaaagctttatgatatgattgatgaccatttgaatgagaactat
gcagtggtcgaagtggaagagcttgaaaacgaaacagtagacaccttggatctgctatta
taccatgtaccaaattttacgacaaagatcaacttgctcaacctactgctggaggataag
gaagtgtttcaaaaagttgtggtttttgtcaattcaaaattgacagcgcaaaaattagcc
aaaagcctatttcatcagaacgaggaagaaatcgccatattaaaccctctcttctatgat
gattttgggtttgacagcgtagcggatttcaaagccagtgacgcatcccgtgcactgatc
atcgccagggaaaattcacccgaggtagaccttgctgatatcccgtttattttccagttt
gagttgcccaacgagaaagaacaattcttgcagtacctcgtcaaagataatagcaatgca
gaaacggtggtgctgactttttccacggacctcgagcttcccatggtccgaaaaatagaa
caggtcatcggtaaacgaatggatattcttgatttacctgaagaccttgtcatctacaat
ccttctgctgataataagaagagaaaaacgaattccatagctgaaaacgacgagtcacgg
ggtggtgctttccatcaaaaaaaagaaagtaatgcaaaaaactacaattacggcggcggt
gaaaaagcaaaaatgaaaatgaagaaaaaataa
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