Sphaerobacter thermophilus: Sthe_1702
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Entry
Sthe_1702 CDS
T01128
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sti
Sphaerobacter thermophilus
Pathway
sti03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sti00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Sthe_1702
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sti03400
]
Sthe_1702
Enzymes [BR:
sti01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Sthe_1702
DNA repair and recombination proteins [BR:
sti03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Sthe_1702
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
AAA_16
AAA_22
RecG_dom3_C
DUF2089
Motif
Other DBs
NCBI-ProteinID:
ACZ39136
UniProt:
D1C4G9
LinkDB
All DBs
Position
1:1871725..1875246
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AA seq
1173 aa
AA seq
DB search
MAFENIIPLLHQEPDHRALLDAIRRLKPGRVLEIEGPPTSARLAILAALIAEVSHPVLIV
TDRLDSAEEVTAGLAEYLPDDRDPTLWPVSETLPYELLPVDRSVSALRVELLARLARREP
VPIVAPARALTQLLSPPADVSAQSWHLAVGERLRSDAFVASLLDAGYEMVPVVQAPGQVG
RRGGIIDVFPPVGDHALRIELFGDEIDSLRLIDPNTQRSVRRVEHYDILPPLEVSLAQRD
AALSALRQMDTTTLRPEVAEEWERSLQRLERGQVTVGLELLAPLLLPEPASLLDYLTMGE
HLLVVVEPASVQLSITQLEAQAEELRDALEDAGELPSGMPRPYLDWQAVADRLSGARQIA
FGPVPTHWSPPVAIIPDARPVYGRELPAYAGRLDALVADVRERLADGWAVILASEQSGRL
TEVLEEHDIFPRTRKRPAGNGRIAPPPEPPTPGTVEVVYSRLNGGWEHGGIKVLLLTDRE
MFGYRRVAAPAPRRRAARRPPLLPSLTPGQYVVHVEHGIARYGGLVTLEVSGVEREYLLL
EYAANDRLYLPVDQIDRITPYEGAGIEPKLTRLGSPEWARVKQRVRRAVREMAFELLQLY
AAREATEGVAFGPDTDWDRELEESFPYVETPGQLQAIREVKADMEKPRPMDRLVCGDVGY
GKTEVALRAAFKAVNNGYQVAILVPTTILALQHYHTFRSRLAPFPVRIEMLSRLRSRKEQ
TQILQQLERGEIDVIIGTHRLLQRDVRFKKLGLVIIDEEQRFGVAHKEHFKRLRTNVDVL
TMTATPIPRTLYMALSGIRDLSVITTPPQERTPIRTFVTASNDSLIREAILREISRGGQV
YFVHNRVQSIYHVLERLEKLVPEARFGVGHGQMDEDELEQLMLAFMQHEFDVLVCTTIIE
SGVDIPNVNTIIIDRAHQLGLTQLYQLRGRVGRSHHRAYAYVLYDANVPLSAEAVARLEA
IQEATELGAGFQIALRDLEIRGAGNVLGPEQSGHVAAVGLDLYTRMLATAVEEIKQGRPI
EEPEAVTVDLPIEATIPESYVGDEGVRIDLYRRLAAVRTYAELRDLQEEMIDRFGPMPDP
LLRLVDLARLRIRANGLGITSMVEREGEVYIRPVLGSRLNQAQLRRELGDGVYVTPNQVR
LVLSRLRVNVREAVQGVLDAVEEADATVLAAAG
NT seq
3522 nt
NT seq
+upstream
nt +downstream
nt
gtggcattcgagaacatcatcccgttgcttcaccaggagccagaccaccgcgcgctcctc
gacgccatccggcggctgaagccaggccgcgttctggagatcgaaggtccgcccacctcc
gcgcgcctcgcaatcctcgcagcgctgatcgccgaggtgtcccacccggtcctgatcgtg
accgaccggttggacagcgcagaggaagtcaccgccgggcttgcggagtacctgcccgac
gaccgcgatccgactctgtggccggtctccgagaccctgccctacgaattgctaccggtc
gatcggtccgtgagcgcgctgcgcgtcgaactcttggccaggttggcgcggcgggagccg
gtcccgatcgtcgcacccgcacgggccctgacacagctcctcagcccgccggcggacgtg
tctgctcaatcatggcacctcgcggtgggcgagcgcctgcgctccgatgccttcgtggcc
agcctgctcgacgccgggtacgaaatggtcccggtggtccaggccccaggccaggtcggt
cgcaggggcggcatcatcgacgtcttcccacccgtcggcgaccacgcgctccgcatcgag
ttgttcggcgacgagatcgattcgctacgcctgatcgacccgaacacccagcgctcggtc
cggcgcgtcgagcactacgacatcctcccgccgctggaggtcagcctggcccagcgagat
gcggccctcagcgcgctgcggcagatggacacgacaaccctgcggcccgaggtggcagag
gagtgggagcgatcgctccagcgcttggagcgcggccaggtgacggtcggcctcgagttg
cttgcccccttgctgttgcctgagccggcctcgttgctggactacctcaccatgggcgag
cacctgttggtagtggttgagccggcgtcggtccagctctcgatcacgcagctcgaagcg
caggcggaggagctacgggacgcactcgaggacgccggggagctgccgtccggcatgccc
cgcccgtacctcgactggcaggccgtggccgaccgactgagcggagcccgccagatcgcc
ttcgggccggttccgacgcactggtccccgccggtggcgatcatccccgacgcgcgcccg
gtctacgggcgggaattgccagcctacgcgggacgcctcgacgcgctcgtcgccgacgtg
cgcgagcgattggcggacggctgggcggtcatcctggccagcgagcagagtgggcggctc
accgaggtcctggaggaacacgacatcttcccgcgcacgcgcaagcgccccgccgggaac
gggcggatcgcgccgccgccggagccgccgacgccgggcacggtcgaggtggtgtacagc
cggctcaacggcggctgggaacacggcgggatcaaggtcctcctgctgaccgatcgcgag
atgttcggctaccggcgggtggcagcgcccgcaccgcgccgccgtgccgcccgccgccca
ccgctcctcccgagcctcacgcccgggcagtacgtggtccacgttgagcacggcatcgcg
cgctacggtggcctcgtcaccctcgaagtgagcggcgtcgagcgggagtacctgctcctc
gagtacgcggccaacgaccggctctacctgccggtggaccagatcgaccggatcacccca
tacgaaggcgcggggatcgagccgaagctcacgcgcctcggttcgccggagtgggcacgt
gtcaagcagcgcgtgcgcagagccgtgcgcgagatggcgttcgagctactccagctctac
gccgcgcgtgaagccaccgaaggcgtggccttcggccccgacacggattgggaccgcgag
ctggaggagtccttcccgtacgttgagacgcccggccagttgcaggcgatccgtgaggtc
aaggccgacatggagaagccacggccgatggatcgcctggtctgcggcgatgttggctac
ggcaagaccgaggtggcactacgcgctgccttcaaggcggtcaacaacggctatcaggtc
gcgatcctggtgcccaccacgatcctggcgctgcagcactaccacacattccgctcccgc
ctggctccttttccggtgcggattgagatgctctcccggctgcggagccggaaggagcag
acccagatcctgcagcagctcgagcgtggtgagatcgacgtgatcatcggaacccaccgg
ctgctccagcgcgacgtgcgcttcaagaaactgggtctggtgatcatcgacgaggagcag
cgcttcggcgtggcccacaaggagcacttcaagcgcctccgcaccaacgtcgacgtgctg
acgatgacggcgacgccgatcccgcgcacgctctacatggccctgtcggggatccgcgac
ctgtcagttatcaccacgccgccgcaggagcggacgccgatccgcaccttcgtcaccgcg
agcaatgactcactgatccgcgaggcgatcctgcgcgagatctcccgaggcgggcaggtc
tacttcgtacacaaccgtgtgcagagcatctaccacgtgctggagcggctggagaagctg
gtgccggaggcccgcttcggcgtcggccatggccagatggatgaggacgaactcgagcag
ctgatgctcgcgttcatgcagcacgagttcgacgtcttggtctgcaccacaatcattgag
tcgggcgtcgacatcccgaacgtcaacacgatcatcatcgaccgcgctcaccagctcgga
ctgacccagctctaccagctccgcgggcgtgtcggacgcagccaccaccgcgcctacgcc
tacgtgctctacgatgccaacgtacccctcagcgccgaggcagtggcccggctcgaggcg
atccaggaggcgacggagctgggcgccggcttccagatcgcgttgcgcgacctggagatt
cgcggggcgggcaacgtgctcggccccgagcagagcggccatgtggcagccgtcggcctc
gatctctacacccgaatgctggcgacggcggtcgaggagatcaagcagggtcggccgatc
gaggagccggaggccgtcacggtcgacctcccgatcgaggcaaccatccctgagagctac
gtcggcgacgagggcgtgcgcatcgacctttaccggcggctggcggccgtccggacctac
gccgaactgcgcgatctgcaggaggagatgatcgaccgcttcggcccgatgcccgacccg
ctactccggctcgtggacctcgcacggctgcgcatccgcgccaatgggctcggcatcacc
tcgatggtggaacgcgagggcgaggtctacatccggccggtgctcgggtcccggctcaac
caggcacagcttcggcgcgagctcggcgacggggtctacgtcaccccgaaccaggtccgc
ctggtcctctcccgcttacgcgtgaatgtccgagaggccgtgcaaggggtcctggacgcc
gtcgaggaggccgatgcgaccgtcctcgccgcggccggatag
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