Streptococcus salivarius JIM8777: SALIVA_0636
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Entry
SALIVA_0636 CDS
T02089
Symbol
rnr1
Name
(GenBank) exoribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
stj
Streptococcus salivarius JIM8777
Pathway
stj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
stj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SALIVA_0636 (rnr1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
stj03019
]
SALIVA_0636 (rnr1)
03016 Transfer RNA biogenesis [BR:
stj03016
]
SALIVA_0636 (rnr1)
Enzymes [BR:
stj01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
SALIVA_0636 (rnr1)
Messenger RNA biogenesis [BR:
stj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SALIVA_0636 (rnr1)
Transfer RNA biogenesis [BR:
stj03016
]
Prokaryotic type
tRNA degradation factors
SALIVA_0636 (rnr1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
CSD2
S1
RNase_II_C_S1
TnpV
Motif
Other DBs
NCBI-ProteinID:
CCB94963
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All DBs
Position
638820..641273
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AA seq
817 aa
AA seq
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MKETIINYLKEHGKSSVNDIAQALNHAGGEKFPQLIKAISAMESKGQLRFNRDGSVSLRP
KKENPNQVTVEGVFRANKNGFGFLHVDDSEDDMFIGRNDVGHAIDGDTVAVVIKKPADRL
RGTAAEARVVEIVERSLKTVVGKFILSDEKEPYAGYIKSKNQKIQQPIYIKKEPVALDGT
EIIKVDIEKYPNRHYDYFVGSVRDIIGHQGDAGIDVLEVLESMDIVSEFPEDVMAEAEAV
PDAPSQEDLVGRVDLRQEVTFTIDGADAKDLDDAVHIKRLPNGNFELGVHIADVSYYVTE
GSALNREAVARGTSVYVTDRVVPMLPERLSNGICSLNPNVDRLTQSAIMEITPKGKVVNH
KICQSVINTTFRMTYSDVNEMLAGNPEKIEQFKPIMDSVSAMAELHKILEDMRERRGALN
FDTSEARILVNEKGMPVDIVVRERGTAERMIESFMLAANECVAEHFAKAKLPFIYRIHEE
PKAEKLQRFMDYASIFGVQIKGTANKMDQLDLQEFMAKVQGKPGAEVMNMMLLRSMQQAR
YSEHNHGHYGLAAQYYTHFTSPIRRYPDLLVHRMIREYTNNMSQETREHFEEVIPELATS
SSTLERRAIDAERVVEAMKKAEYMEEFVGQEFDGIVGSVVKFGMFVELPNTIEGLVHITT
LPEFYNYNERTMTLQGEKTGKTFRVGQPIRVKLTRADKETGDIDFQYLPSEYDVTEKVDH
KARQEREEKAKAFRNRGPRRDRQNGDFERRGKRGDNRNRQDGNGRKGSYDEKRKSSKKPD
KRKNQNRPHNDNKGRESGRRKKKGNKPFYKDAAKKRK
NT seq
2454 nt
NT seq
+upstream
nt +downstream
nt
atgaaagaaactattataaattatttgaaggagcatgggaaatccagtgtaaacgacatt
gcccaggctcttaatcatgctgggggtgaaaagttccctcagctcatcaaggccatatca
gccatggaaagtaaggggcagttgcgttttaaccgagatggctctgtatccttgcgtcct
aagaaagaaaatcctaatcaggtgactgttgaaggtgtcttccgtgccaataagaacggc
tttggttttttgcatgtcgatgacagtgaagatgatatgttcatcggtcgtaatgatgtt
ggccatgctattgatggtgatactgttgccgttgtcatcaagaagccagcagatcgttta
cgagggacagcagcagaagcacgtgttgttgaaattgtagaacgttcgcttaagactgtt
gtagggaaatttatccttagcgacgagaaagaaccctatgcgggttacattaagtctaaa
aaccaaaaaattcagcagccaatttatatcaagaaagaaccagttgccctagatggtact
gaaattattaaggttgatatcgaaaaataccctaaccgtcactatgattatttcgtagga
agtgttcgtgacattattggtcatcagggggatgctggtattgatgtcttggaagtcttg
gaatcaatggatattgtttcagaattcccagaggatgtcatggcggaagcagaagctgtc
ccagatgcaccgagtcaggaagacctcgttggtcgtgttgaccttcgtcaagaagtaacc
tttactattgacggagccgatgctaaggacttggacgatgcggtccatatcaaacgtttg
ccaaatggtaactttgagcttggtgttcatattgctgatgtgtcttactatgttactgaa
ggatctgcacttaaccgtgaggccgtagcacgtgggacatctgtttatgtgacagaccgc
gtagtgccaatgttgcctgagcgtctttcaaatggtatttgttccctaaatcccaatgtt
gatcgcttgacgcagtcagccatcatggagattactccaaaaggtaaggtggttaatcat
aagatttgccaatctgtgattaatacaaccttccgtatgacctacagtgatgtcaatgag
atgttggctggaaatccagaaaagattgagcagtttaagccaatcatggattctgtatca
gctatggcagaattgcataagattttagaagacatgcgtgagcgtcgaggtgcccttaac
tttgatacatctgaagctcgtatcttggttaatgagaagggaatgccagtggatatcgtg
gtgcgtgaacgcggaacagccgagcgaatgattgaatccttcatgttggctgccaatgaa
tgtgtggcagagcactttgctaaggctaagttgccatttatttaccgtattcacgaagag
ccaaaggctgagaaattgcaacgcttcatggattatgcctctatttttggtgttcaaatc
aaaggaactgccaataagatggatcagctagacttgcaagagtttatggccaaagttcag
ggaaaacctggagcagaagtcatgaacatgatgctgcttcgttcaatgcaacaagcccgc
tattcagaacacaatcatggacactacggacttgcggctcagtactatacccactttact
agtccaatccgtcgttacccagatctcttggttcaccgaatgattcgtgagtacactaac
aatatgtctcaagagacgcgtgaacattttgaagaggttattcctgagttagcgacatca
tcttcaactcttgaacgtcgtgccattgatgccgaacgtgtcgttgaagctatgaaaaaa
gcggaatacatggaagagtttgttggccaagaattcgatggtattgtcggaagtgtggtt
aaatttggtatgtttgtggaattgccaaatactatcgaaggtttggttcacatcacgacc
cttccagaattttacaattacaatgaacgtaccatgacacttcagggtgagaaaactggt
aagactttccgagttggtcagcctatccgtgtcaaattaacacgtgcggataaggaaacc
ggagacattgacttccaataccttccaagcgagtatgatgtcactgaaaaagtagatcac
aaggctcgtcaggaacgtgaagaaaaggcaaaagccttccgcaatagaggtccacgtcgt
gaccgtcaaaatggagacttcgaacgtcgtggtaaacgtggggataaccgtaaccgtcaa
gacggtaatggtcgtaaaggttcttatgacgaaaaacgtaagtcatctaagaaacccgac
aagcgtaagaatcaaaaccgtcctcataatgataacaagggacgtgagagtggccgtcgt
aagaagaaagggaacaaacctttctacaaggacgctgctaaaaaacgaaaatag
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