Salmonella enterica subsp. enterica serovar Typhimurium LT2: STM1453
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Entry
STM1453 CDS
T00065
Symbol
nth
Name
(RefSeq) DNA glycosylase/apyrimidinic (AP) lyase
KO
K10773
endonuclease III [EC:3.2.2.-
4.2.99.18
]
Organism
stm
Salmonella enterica subsp. enterica serovar Typhimurium LT2
Pathway
stm03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
stm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
STM1453 (nth)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
stm03400
]
STM1453 (nth)
Enzymes [BR:
stm01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
STM1453 (nth)
DNA repair and recombination proteins [BR:
stm03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
STM1453 (nth)
Prokaryotic type
STM1453 (nth)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HhH-GPD
HHH
EndIII_4Fe-2S
RecR_HhH
P_gingi_FimA
Motif
Other DBs
NCBI-GeneID:
1252971
NCBI-ProteinID:
NP_460416
UniProt:
Q8ZPM5
LinkDB
All DBs
Position
complement(1528548..1529183)
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AA seq
211 aa
AA seq
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MNKAKRLEILTRLRDNNPHPTTELNFTSPFELLIAVLLSAQATDVSVNKATAKLYPVANT
PAAMLELGVEGVKSYIKTIGLFNSKAENVIKTCRILLDKHNGEVPEDRAALEALPGVGRK
TANVVLNTAFGWPTIAVDTHIFRVCNRTQFAPGKNVEQVEEKLLKVVPNEFKVDCHHWLI
LHGRYTCIARKPRCGSCLIEDLCEYKEKVDI
NT seq
636 nt
NT seq
+upstream
nt +downstream
nt
atgaacaaagcaaaaaggctggaaattctgacgcgcctgcgcgacaacaatccgcacccc
acaacggaactcaatttcacgtcgccgtttgagttgctgattgccgtgttgctttccgcg
caggcaaccgacgtcagcgtgaacaaggctaccgccaaactttacccggtcgccaatacg
ccagccgcgatgctggagctgggcgtagagggcgtgaaatcctatatcaaaactatcggc
ttatttaacagtaaagcggaaaacgtgattaagacctgccgtattttactggacaagcat
aatggcgaagtgccggaggatcgggcggcgctggaagcgcttcccggcgtggggcgtaaa
accgctaacgtggtgctaaataccgccttcggctggccgaccatcgccgttgatacgcat
atatttcgtgtatgcaaccgaacgcagttcgcgccgggtaaaaatgtcgagcaggtagaa
gagaagttgctgaaagtggtgccgaatgagttcaaagtggactgccatcactggttaatt
ttgcatggccgctatacctgtatcgcccgaaaaccccgctgcggctcctgcctcattgaa
gatctttgcgaatacaaagaaaaagtcgatatttga
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