KEGG   Streptomyces sp. CNQ-509: AA958_32405Help
Entry
AA958_32405       CDS       T03968                                 

Gene name
ligB
Definition
(GenBank) ATP-dependent DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
strc  Streptomyces sp. CNQ-509
Pathway
strc03030  DNA replication
strc03410  Base excision repair
strc03420  Nucleotide excision repair
strc03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:strc00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    AA958_32405 (ligB)
   03410 Base excision repair
    AA958_32405 (ligB)
   03420 Nucleotide excision repair
    AA958_32405 (ligB)
   03430 Mismatch repair
    AA958_32405 (ligB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:strc03032]
    AA958_32405 (ligB)
   03400 DNA repair and recombination proteins [BR:strc03400]
    AA958_32405 (ligB)
Enzymes [BR:strc01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     AA958_32405 (ligB)
    6.5.1.6  DNA ligase (ATP or NAD+)
     AA958_32405 (ligB)
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     AA958_32405 (ligB)
DNA replication proteins [BR:strc03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    AA958_32405 (ligB)
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     AA958_32405 (ligB)
DNA repair and recombination proteins [BR:strc03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     AA958_32405 (ligB)
   NER (nucleotide excision repair)
    Other NER factors
     AA958_32405 (ligB)
   MMR (mismatch exicision repair)
    Other MMR factors
     AA958_32405 (ligB)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase PNKP_ligase
Motif
Other DBs
NCBI-ProteinID: AKH86145
UniProt: A0A0F7NCD5
LinkDB All DBs
Position
complement(7625225..7626760)
Genome map
AA seq 511 aa AA seqDB search
MLFADLARTSREIAATRARSEKTALLAALFREADPADAPLVVTYLAGRLPQRRTGVGWSA
LKDAPAAARQPRLTVREVHDAFDAIAAVSGKGAQAERRRLVHELLGAATTEEQRFLAGLI
GGELRQGALDALAVEGLAAAVDADPARVRRAVMLAGSVGAVAEALLARGPEALADFKLSV
GSPVQPMLAQSAKDVDEAIGRLGPCAVEEKLDGIRVQVHRDGDDVRIYTRTLDEITARLP
EVVAAARELTAADAVLDGEVIALGDGGDPRPFQEVAGRVGSRVDVAGAQQTLPVYPVFFD
LLAVDGRDLLTAPMRERQAELARITPEPRRVRRVEVADPEDAAQRAAAREFAAVTLARGH
EGVVVKALDSEYSAGRRGAAWLKVKPVHTLDLVVLGAEWGHGRRTGTLSNLHLGARREDG
SFAMLGKTFKGMTDALLAWQTERLQELAVAQKDWGVVVLPELVVEVAFDGVQRSPRYPEG
VTLRFARVVRYRDDKTAAEADTVASVLAMLR
NT seq 1536 nt NT seq  +upstreamnt  +downstreamnt
atgctcttcgccgacctcgcccgtacctcgcgggagatcgccgccacccgggcccgctcg
gagaagaccgcgctgctcgccgcgctgttccgcgaggccgaccccgccgacgcgcccctc
gtggtcacgtacctggcgggccggctgccgcagcgcaggaccggcgtgggctggagcgcg
ctgaaggacgcgcccgccgccgcccggcagccgcggctgaccgtgcgcgaggtgcacgac
gcgttcgacgccatcgccgccgtctccggcaagggcgcccaggccgagcggcgccggctg
gtgcacgagctgctgggtgccgccacgacggaggagcagcgcttcctcgccgggctgatc
ggcggcgagctgcggcagggcgcgctggacgcgctcgcggtcgagggcctggcggccgcg
gtggacgccgacccggcgcgggtgcggcgcgcggtgatgctcgccggttccgtgggcgcc
gtcgccgaggcgctgctcgcccgcgggccggaggcgctggcggacttcaagctgtcggtc
ggcagtcccgtgcagccgatgctcgcgcagtccgcgaaggacgtggacgaggcgatcggc
cggctcgggccgtgcgccgtggaggagaagctcgacggcatccgggtgcaggtgcaccgg
gacggcgacgacgtacggatctacacccgcacgctcgacgagatcaccgcccggctcccc
gaggtcgtcgccgccgcccgcgagctgaccgcggcggacgccgtgctcgacggcgaggtg
atcgccctcggggacggcggggacccgcggccgttccaggaggtcgccggccgggtcggc
tcccgggtggacgtggccggggcacagcagacgctgccggtgtacccggtcttcttcgac
ctcctcgccgtcgacggccgcgacctgctgaccgcgccgatgcgcgagcgccaggccgag
ctggcccggatcacgccggagccgcgccgggtgcgccgggtcgaggtggccgaccccgag
gacgcggcgcagcgggcggcggcgcgggagttcgccgcggtgacgctggcgcggggccac
gagggcgtcgtcgtcaaggcgctggactcggagtacagcgcgggccgccgcggcgcggcc
tggctgaaggtgaagccggtgcacacgctggacctcgtggtgctgggggcggagtggggc
cacgggcggcgtacgggcacgctgtcgaacctgcacctcggcgcgcgccgcgaggacggc
tcgttcgcgatgctcggcaagacgttcaaggggatgacggacgcgctgctggcgtggcag
acggagcggctccaggagctggcggtggcgcagaaggactggggggtggtggtgctgccc
gagctggtggtggaggtcgcgttcgacggggtgcagcgctcgccgcgctatccggagggg
gtgacgctgcggttcgcgcgggtggtgcggtaccgggacgacaagacggcggcggaggcg
gacacggtcgcctcggtcctggcgatgctgcgctga

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