KEGG   Streptomyces sp. 4F: ASR50_04130Help
Entry
ASR50_04130       CDS       T04265                                 

Definition
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
strf  Streptomyces sp. 4F
Pathway
strf03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:strf00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    ASR50_04130
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:strf03400]
    ASR50_04130
Enzymes [BR:strf01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     ASR50_04130
DNA repair and recombination proteins [BR:strf03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     ASR50_04130
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_C DNA_ligase_OB_2 RNA_ligase
Motif
Other DBs
NCBI-ProteinID: ALV54271
UniProt: A0A0U3PXN1
LinkDB All DBs
Position
996283..997263
Genome map
AA seq 326 aa AA seqDB search
MTLPLIPPMLATPGRLPPPSADARWAYETKQDGQRAVVYLPGDGTVVLRARSGQEITGAY
PELRPLAAALGSRPAVLDGEVLALDAEGRASFQLLQSRMGLAHSPARAARRAETVPAHLI
LFDVMHLDGRPLLREPYVRRREELLDLGLDGPSWSTPAAIVGHGAQALRATVEHGLEGLV
CKRLDSVYEPGVRSRAWIKIRNMRSEDVLVGGWLPGKGRLTGLPGAVLVGQRAGGRLRYV
GGVGTGWSEAERTELAALLKAAATDVCPFDPAPSVPGARWVVPRLVGEVRYSTRTREGML
RQPSWLRLRPDLAPEDAAADLPDDLG
NT seq 981 nt NT seq  +upstreamnt  +downstreamnt
gtgaccctcccgctgatcccgcccatgctcgccacccccggccggctgccgcctccctcg
gcggacgcgcgctgggcgtacgagaccaagcaggacggccagcgggcggtggtctacctc
ccgggcgacgggaccgtcgtcctgcgcgcccggtccggccaggagatcaccggcgcgtat
cccgagctgcgcccgctggcggccgcgctcgggtcccgtcccgccgtgctggacggggag
gtcctcgccctggacgcggagggcagggccagcttccagctgctccagtcgcggatgggc
ctggcccactcccccgcccgcgcggcccgccgggcggagacggtgccggcgcacctgatc
ctgttcgacgtgatgcacctggacggccgcccgctgctccgcgagccgtacgtccgccgc
cgcgaggagctgctggacctcgggctcgacgggccgtcctggtccaccccggccgcgatc
gtgggccacggcgctcaggcgctgcgggccaccgtcgagcacggcctggaggggctggtg
tgcaagcggctggactcggtgtacgagccgggggtccgctcccgcgcctggatcaagatc
cgcaacatgcgcagcgaggacgtgctggtcggcggctggctgccgggaaagggccggctg
accggactgccgggcgccgtcctggtcgggcagcgggcggggggccggctgcgctacgtg
ggcggcgtgggcaccggctggagcgaggccgaacgcaccgagctggccgcgctgctgaag
gccgcggcgaccgacgtctgccccttcgacccggcgccctccgtcccgggcgcccggtgg
gtggtgccccggctggtcggcgaggtgcgctacagcacccgtacccgggagggcatgctg
cgccagccgtcctggctgcggctcaggcccgacctggcgcccgaggacgcggcggccgac
ctccccgacgacctgggctga

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