Peterkaempfera bronchialis: C7M71_022780
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Entry
C7M71_022780 CDS
T05561
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
stri
Peterkaempfera bronchialis
Brite
KEGG Orthology (KO) [BR:
stri00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
stri03016
]
C7M71_022780
Enzymes [BR:
stri01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
C7M71_022780
Transfer RNA biogenesis [BR:
stri03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
C7M71_022780
Prokaryotic type
tRNA splicing ligases
C7M71_022780
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF4514
Motif
Other DBs
NCBI-ProteinID:
AXI79805
UniProt:
A0A345T1F0
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All DBs
Position
5129449..5130642
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AA seq
397 aa
AA seq
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MAYTAVPGVRVPIRMWTDPATVEGQAMQQLRNISSLPWISGLAVMPDVHLGKGATVGSVI
AMQGAVCPAAVGVDIGCGMSAVKTSLTARDLPDDLSRLRSRIEEAIPVGRHGHDDPVDPR
RLHGLPTAGWDDFWQRFDGLAEAVKFRRERAHSQMGSLGGGNHFIEVCLDTDGAVWLMLH
SGSRNIGKELAEYHIGIARYLPHNQGLVDRDLAVFIADTPQMAAYRQDLFWAQEYAKHNR
SLMMALLQDTVRREFRRTKVAFDQVISCHHNYVAEERYDGQDMLVTRKGAIRAGSGEYGI
IPGSMGTGSYIVRGLGNTAAFNSASHGAGRKMSRNAAKKRFTADDLAAQTKGVECRKDSG
VVDEIPAAYKPIEKVIDQQRDLVEVVAQLKQVVCVKG
NT seq
1194 nt
NT seq
+upstream
nt +downstream
nt
atggcgtacaccgcggtgcccggcgtccgggtgccgatccgcatgtggaccgacccggcc
accgtcgagggccaggccatgcagcagctgcgcaacatctcctccctgccgtggatcagc
ggcctcgccgtgatgcccgacgtacacctcggcaagggcgcgacggtcggctccgtcatc
gccatgcagggcgccgtctgcccggcggcggtcggcgtggacatcggctgcggcatgagc
gcggtcaagacctccctcaccgcccgcgacctgcccgacgacctctcccggctgcgttcc
cgtatcgaggaggccatcccggtcggccgccacggccatgacgacccggtcgacccacgc
cgcctgcacggcctgcccaccgccggctgggacgacttctggcagcggttcgacggactg
gccgaggccgtgaagttccgccgggaacgggcccactcccagatgggttcgctgggcggc
ggcaaccacttcatcgaggtctgcctggacaccgacggcgcggtgtggctgatgctgcac
tccggttcccgcaacatcggcaaggaactggccgagtaccacatcggcatcgcccgctac
ctgccgcacaaccagggcctggtcgaccgcgacctggcggtcttcatcgcggacacgccg
cagatggcggcgtaccggcaggacctcttctgggcgcaggagtacgccaagcacaaccgc
tccctgatgatggcgctcctccaggacaccgtccgccgggagttccgccgcaccaaggtc
gccttcgaccaggtgatctcctgccaccacaactacgtggcggaggagcggtacgacggc
caggacatgctggtcacccgcaagggcgccatccgcgccggctccggcgagtacggcatc
atccccggctccatgggcaccggctcgtacatcgtccgcggcctcggcaacaccgccgcc
ttcaactccgcctcccacggcgccggccgcaaaatgagccgcaacgccgccaagaagcgc
ttcaccgccgacgacctcgccgcccagaccaagggcgtggagtgccgcaaggacagcggc
gtcgtcgacgagatccccgccgcctacaagcccatcgaaaaggtcatcgaccagcagcgc
gacctggtcgaggtcgtcgcccaactcaagcaggtcgtctgcgtcaagggctga
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