Streptococcus salivarius NCTC 8618: SSAL8618_03275
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Entry
SSAL8618_03275 CDS
T03511
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
strs
Streptococcus salivarius NCTC 8618
Pathway
strs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
strs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SSAL8618_03275
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
strs03019
]
SSAL8618_03275
03016 Transfer RNA biogenesis [BR:
strs03016
]
SSAL8618_03275
Enzymes [BR:
strs01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
SSAL8618_03275
Messenger RNA biogenesis [BR:
strs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SSAL8618_03275
Transfer RNA biogenesis [BR:
strs03016
]
Prokaryotic type
tRNA degradation factors
SSAL8618_03275
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
CSD2
S1
RNase_II_C_S1
TnpV
HTH_24
Motif
Other DBs
NCBI-ProteinID:
AIY20787
UniProt:
A0A3S5E1A1
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All DBs
Position
660399..662852
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AA seq
817 aa
AA seq
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MKESIINYLKEHGKSSVNDIAQALNHAGGEKFPQLIKAMSAMESKGQLRFNRDGSVSLRP
KKENPNQVTVEGIFRANKNGFGFLHVDDSEDDMFIGRNDVGHAIDGDTVAVVIKKPADRL
RGTAAEARVVEIVERSLKTVVGKFILSDEKEPYAGYIKSKNQKIQQPIYIKKEPVALDGT
EIIKVDIEKYPNRHYDYFVGSVRDIIGHQGDAGIDVLEVLESMDIVSEFPEDVMAEAEAV
PDAPSQEDLVGRVDLRQEVTFTIDGADAKDLDDAVHIKRLPNGNFELGVHIADVSYYVTE
GSALNREAVARGTSVYVTDRVVPMLPERLSNGICSLNPNVDRLTQSAIMEITPKGKVVNH
KICQSVINTTFRMTYSDVNEMLAGNPEKIEQFKPIMDSVSAMAELHKILEDMRERRGALN
FDTSEARILVNEKGMPVDIVVRERGTAERMIESFMLAANECVAEHFAKAKLPFIYRIHEE
PKAEKLQRFMDYASIFGVQIKGTANKMDQLDLQEFMAKVQGKPGAEVMNMMLLRSMQQAR
YSEHNHGHYGLAAQYYTHFTSPIRRYPDLLVHRMIREYTNNMSQETREHFEEVIPELATS
SSTLERRAIDAERVVEAMKKAEYMEEFVGQEFDGIVGSVVKFGMFVELPNTIEGLVHITT
LPEFYNYNERTMTLQGEKTGKTFRVGQPIRVKLTRADKETGDIDFQYLPSEYDVTEKVDH
KARQEREEKAKAFRNRGPRRDRQNGDFERRGKRGDNRNHQDANGRKGSYDEKRKSSKKPD
KRKNQNRPHNDNKGRESGRRKKKGNKPFYKDVAKKRK
NT seq
2454 nt
NT seq
+upstream
nt +downstream
nt
atgaaagaatctattataaattatttgaaggagcatgggaaatccagtgtaaacgacatt
gcccaggctcttaatcatgctgggggagaaaagttccctcagctcatcaaggccatgtca
gccatggaaagtaagggacagttgcgttttaaccgagatggctctgtatccttgcgtcct
aagaaagaaaatcctaatcaggtgactgttgaaggtatcttccgtgccaataagaacggt
tttggtttcttgcatgttgatgacagtgaagatgacatgttcatcggtcgtaatgatgtt
ggccatgccattgacggtgatactgttgccgttgttatcaagaagccagcagatcgtttg
cgtgggacagcagcagaagcgcgtgttgttgaaattgtagaacgttcgcttaagactgtt
gtagggaaatttatccttagcgacgagaaagaaccttatgcgggttacattaagtctaaa
aaccaaaaaattcagcagccaatttatatcaagaaagaaccagttgccctagatggtact
gaaattatcaaggttgatattgaaaaataccctaaccgtcactatgattatttcgtagga
agtgttcgtgacattattggtcatcagggggatgccggtattgatgtcttggaagtcttg
gaatcaatggatattgtttcagagtttccagaggatgtcatggcggaagcagaagctgta
ccagatgcaccgagtcaggaagacctcgttggtcgtgttgacctccgtcaagaggtaact
tttaccattgacggagctgatgctaaggacttggatgatgcggttcatatcaaacgtttg
ccaaatggtaactttgagcttggtgttcatattgctgatgtgtcttactatgttactgaa
ggatctgcacttaaccgtgaggccgtagcacgtgggacttctgtttatgtgacagaccgc
gtggtaccaatgttgcctgagcgtctttcgaatggtatttgttcacttaatcccaatgtt
gatcgtttgacgcaatcagccattatggagattactcctaaaggtaaggtggttaatcat
aagatttgtcaatctgtgattaatacaaccttccgtatgacctacagtgatgtcaatgag
atgttggctggaaatccagaaaagattgagcagtttaagccaatcatggattctgtatca
gctatggcagaattgcataagattttagaagacatgcgtgagcgtcgtggtgcccttaac
tttgatacatctgaagctcgtatcttggttaatgagaagggaatgccagtggatatcgtg
gtgcgtgaacgtggaacagccgagcgaatgattgaatccttcatgttggctgccaatgaa
tgtgtggcagagcactttgctaaggctaagttgccatttatttaccgtatccacgaagag
ccaaaggctgagaaattgcaacgcttcatggattatgcctctatctttggtgttcaaatc
aaaggaactgccaataagatggatcagctagacttgcaagagtttatggccaaagttcag
ggaaaacctggagcagaggtcatgaacatgatgctgcttcgttcaatgcaacaagcccgc
tattcagaacacaaccacggacactatggacttgcggctcagtattatacccactttact
agtccaatccgtcgttacccagacctcttggttcaccgaatgattcgtgagtacactaac
aatatgtctcaagaaacacgtgaacattttgaagaggttattcctgagttagcgacatca
tcttcaactcttgaacgtcgtgccattgatgccgaacgtgtcgttgaagctatgaaaaaa
gcggaatacatggaagagtttgttggccaagaattcgatggtattgtcggaagtgtggtt
aaatttggtatgtttgtggaattgccaaacactatcgaaggtttggttcacatcacgacc
cttccagaattttacaattacaatgaacgtaccatgacacttcagggtgagaaaactggt
aagactttccgagttggtcagcctatccgtgtcaaattaacacgtgcggataaggaaaca
ggagacattgacttccaataccttccaagcgagtatgatgttactgagaaagtagaccac
aaggctcgtcaggaacgtgaagagaaggcgaaagccttccgaaatagaggtccacgtcgt
gaccgtcaaaatggagacttcgaacgtcgtggtaaacgtggggataaccgtaaccatcaa
gatgctaatggtcgtaaaggctcttatgacgaaaaacgtaagtcatctaagaaacccgac
aagcgtaagaatcaaaaccgtcctcataatgataacaagggacgtgagagtggccgtcgt
aagaagaaagggaacaaacctttctacaaggacgttgctaaaaaacgaaaatag
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