KEGG   Streptomyces sp. S10(2016): A4E84_05910Help
Entry
A4E84_05910       CDS       T04777                                 

Gene name
ligB
Definition
(GenBank) ATP-dependent DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
stsi  Streptomyces sp. S10(2016)
Pathway
stsi03030  DNA replication
stsi03410  Base excision repair
stsi03420  Nucleotide excision repair
stsi03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:stsi00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    A4E84_05910 (ligB)
   03410 Base excision repair
    A4E84_05910 (ligB)
   03420 Nucleotide excision repair
    A4E84_05910 (ligB)
   03430 Mismatch repair
    A4E84_05910 (ligB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:stsi03032]
    A4E84_05910 (ligB)
   03400 DNA repair and recombination proteins [BR:stsi03400]
    A4E84_05910 (ligB)
Enzymes [BR:stsi01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     A4E84_05910 (ligB)
    6.5.1.6  DNA ligase (ATP or NAD+)
     A4E84_05910 (ligB)
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     A4E84_05910 (ligB)
DNA replication proteins [BR:stsi03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    A4E84_05910 (ligB)
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     A4E84_05910 (ligB)
DNA repair and recombination proteins [BR:stsi03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     A4E84_05910 (ligB)
   NER (nucleotide excision repair)
    Other NER factors
     A4E84_05910 (ligB)
   MMR (mismatch exicision repair)
    Other MMR factors
     A4E84_05910 (ligB)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_C DNA_ligase_A_N RNA_ligase
Motif
Other DBs
NCBI-ProteinID: AMW09065
UniProt: A0A143BW89
LinkDB All DBs
Position
1405833..1407371
Genome map
AA seq 512 aa AA seqDB search
MLLHRLARVSREVAATSARSRKTALLAELFRDAEAQDVPIVIPYLAGRLPQGRIGVGWKV
LSRPVAPAAEPGLTVRDVDARLAELAAVSGPGSQAERTRLVAELMGAATETEQRFLLGLL
TGEVRQGALDAVAVEGLAQATGAPSADVRRAVMLAGSLQTVAEALLADGPACLDRFRLTV
GRPVLPMLAHSASSVAEAVDKLGACAVEEKLDGIRVQVHRDGDTVRLYTRTLDDITDRLP
EVTAAALELRGERFILDGEVISFDEGGRPRSFQETAGRVGSRTDVATAARAVPVSPVFFD
ALSVDGHDLLDLPFAERHAELARLVPEPMRVRRTLVSGPDDTPAAEEFLAETLKRGHEGV
VAKALDAPYSAGRRGASWLKVKPVHTLDLVVLAAEWGHGRRTGKLSNLHLGARTADGGLA
MLGKTFKGMTDAMLTWQTERLQQLAVETTGYVVTVRPELVVEIAYDGLQRSTRYPAGVTL
RFARVVRYREDKRPEDADTVETLLAAHPEVKP
NT seq 1539 nt NT seq  +upstreamnt  +downstreamnt
atgctgctgcaccggctggcccgagtgtcccgggaggtcgccgccacctcggcgcggtcc
cggaagacggccctgctcgcggagctcttccgggacgccgaggcgcaggacgtgccgatc
gtcatcccgtacctggcgggacggctgccgcaggggcggatcggcgtcggctggaaggtg
ctgagccgcccggtcgccccggcggccgagccgggtctgaccgtgcgggacgtggacgcc
cggctcgcggagctcgccgcggtgtccggtccgggttcccaggcggaacggacccggctg
gtcgcggagttgatgggcgcggccaccgagaccgagcagcggttcctgctcggcctgctc
accggcgaggtccggcagggcgccctggacgcggtggcggtcgagggactggcccaggcg
acgggtgcgccttccgcggacgtacggcgggccgtgatgctcgcgggttccctccagacg
gtggccgaggcgctgctcgcggacggccccgcctgcctcgaccgcttccgtctcaccgtg
ggccgcccggtgctgccgatgctggcgcacagcgcctcctcggtggccgaggcggtcgac
aagctgggcgcctgcgcggtggaggagaagctggacggcatccgcgtccaggtgcaccgc
gacggcgacaccgtgcggctctacacccgcaccctggacgacatcaccgaccgtctgccc
gaagtgacggccgccgcactggagttgcggggcgagcggttcatcctggacggcgaggtg
atctccttcgacgagggcgggcgcccccgctccttccaggagaccgccggccgggtcggc
tcccgcacggacgtggcgacggccgcccgcgcggtgccggtctcccccgtcttcttcgac
gcgctgtccgtcgacggccatgacctgctcgacctgcccttcgccgagcggcacgccgag
ctggcccgcctggtgcccgagccgatgcgggtgcggcgcacgctggtgtccgggccggac
gacacgcccgcggcggaggagttcctggccgagaccctgaagcgcggccacgagggcgtc
gtcgccaaggcgctcgacgccccctacagcgcggggcggcgcggcgcctcctggctgaag
gtcaaacccgtccacaccctcgacctggtcgtgctggccgccgagtggggccacggccgc
cgcaccggcaagctctccaacctccacctgggcgcccgcaccgccgacggcggcctcgcc
atgctcggcaagaccttcaagggcatgaccgacgcgatgctcacctggcagaccgaacgg
ctccagcaactcgccgtcgagaccaccggctacgtggtgaccgttcgtccggaactcgtc
gtcgagatcgcctacgacggactgcagcgctccacccgctacccggccggcgtgaccctg
cgtttcgcccgggtggtccgctaccgggaggacaagcgcccggaggacgccgacacggtc
gagacgctgctggcggctcatccggaggtgaagccgtga

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