Sulfitobacter sp. JL08: C1J05_12390
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Entry
C1J05_12390 CDS
T05585
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
suli
Sulfitobacter sp. JL08
Pathway
suli03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
suli00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C1J05_12390
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
suli03019
]
C1J05_12390
Enzymes [BR:
suli01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
C1J05_12390
Messenger RNA biogenesis [BR:
suli03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
C1J05_12390
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Motif
Other DBs
NCBI-ProteinID:
AXI55189
UniProt:
A0A345RCA2
LinkDB
All DBs
Position
complement(2540857..2542179)
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AA seq
440 aa
AA seq
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MNDFSIMGLPKSLITRLTAMGITEPTPIQNQAIPHALNGRDVMGLAQTGTGKTAAFGLPL
VAQMLELGGRPAPKTLRGLVLAPTRELAGQIAENLRAYAQGTPIKVAMVVGGQSINNQIK
RLERGVDLLVATPGRLIDLMDRRALRLDETVFLVLDEADQMLDLGFIHALRKIAGMLPAE
RQTMLFSATMPKQMNELASSYLNKPIRVEVSPPGKAADKITQEVHFIAKAEKPKLLIEML
DKHRDELALVFGRTKHGCEKLMKSLVNAGYAAGSIHGNKSQGQRDRAIAAFKAGEIRVLV
ATDVAARGLDIPDVRHVYNFDLPNVPENYVHRIGRTARAGADGAAIAFCAPDEMGELKAI
EKAMKMPVPVASGRPWESSEIPDKPKGRGGRPGGGGQKRRFGGGGGGGGAKSSAGKPGGG
QRRRRSGGKGGGKPGGQRAA
NT seq
1323 nt
NT seq
+upstream
nt +downstream
nt
ttgaacgatttttcaatcatgggcttgcccaaatccctgatcacccgcctgacggcaatg
gggatcacggaaccaacgccgatccagaatcaggccatcccccatgcgctgaacgggcgc
gatgtgatgggcctggcgcagaccggcaccggcaagacagccgcattcggtctgccgctt
gtggcgcagatgctggaactgggcggacgcccggcgccgaaaaccttacgcggtcttgtt
ctggcgccgacgcgcgaactggcgggtcagattgccgaaaacctgcgcgcctatgcacaa
ggcaccccgatcaaggttgcgatggttgttggcggtcagtcaatcaacaatcagatcaaa
cggttggagcgcggtgttgatcttctggtggcgacgccggggcggttgatcgacctgatg
gaccgccgcgccctgcggctggacgaaaccgtttttctggtgctggatgaagccgatcag
atgcttgatctgggctttatccatgccctgcgcaagatcgcgggcatgttgccagccgaa
cgccagaccatgctgttttcggccacaatgcccaagcagatgaacgaactggcctcgagc
tatctgaacaaaccgatccgggtcgaagtgtcgccccccggcaaagccgccgacaagatc
acacaagaggtgcattttattgccaaggcggaaaagcccaagctgctgattgaaatgctg
gacaagcatcgcgacgagctggcgctggttttcgggcgcacgaaacacgggtgtgaaaag
ctgatgaagtcgctggtcaacgccggttatgcggcgggatcgatccatggcaacaaaagc
cagggccagcgggatcgcgcaatcgcggccttcaaggcaggcgagatccgcgttcttgtg
gccaccgatgtggccgcgcgcggtctggatatccctgatgtgcgccatgtttacaatttc
gatctgcccaatgtgccggaaaactatgtgcaccggatcgggcgaacagcacgtgcgggt
gcagatggcgctgcgattgcgttttgtgcgcctgacgagatgggcgaattgaaggcaatt
gaaaaggcgatgaaaatgccggtgccggtcgcgtccggacggccctgggaaagttcggaa
atacctgacaagcccaaaggtcgcggtggtcgccccggcggcggtggccagaaacgccgc
tttggcggcggtggtggcggcggtggcgcaaaatccagcgccggaaaacccggcggtggc
cagcgtcgtcgcagaagcggcggcaagggcggcggcaaacccggtggccagcgcgcggcc
tga
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