Sulfurospirillum diekertiae JPD-1: SJPD1_1223
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Entry
SJPD1_1223 CDS
T05109
Name
(GenBank) putative uracil-DNA glycosylase, family 4
KO
K21929
uracil-DNA glycosylase [EC:
3.2.2.27
]
Organism
sulj
Sulfurospirillum diekertiae JPD-1
Pathway
sulj03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
sulj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
SJPD1_1223
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sulj03400
]
SJPD1_1223
Enzymes [BR:
sulj01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.27 uracil-DNA glycosylase
SJPD1_1223
DNA repair and recombination proteins [BR:
sulj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
SJPD1_1223
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UDG
Motif
Other DBs
NCBI-ProteinID:
ATB69333
UniProt:
A0A290HCR4
LinkDB
All DBs
Position
complement(1171908..1172570)
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AA seq
220 aa
AA seq
DB search
MTHIEKIRLLKLLYQYRALGFEFFQEYRPLSLSIQPALSQNLEELKSSVAGCHLCALAKS
RKNVIFGAGNLKAKVMFIGDNPGVSEDETGMLFTGKSGELLANMIEKVLLIPKEDVYVTT
ILKCKTPDNRVPTPEEVACCKPYVMQQIQTIRPQIIVALGSTSFHHLTGEYDTPIDKIRG
TVLNFGEAKLIPTFHPSFLLRNPSAKKEVYADMLKIRSML
NT seq
663 nt
NT seq
+upstream
nt +downstream
nt
atgactcacattgaaaagatacgacttttaaaacttttataccagtacagagctcttgga
tttgaattctttcaagagtatcgaccgctctcgttgagcatacaacctgccctgtcacag
aatttagaagagttaaaaagtagtgtcgcaggatgtcatctttgtgcacttgccaaaagt
cgtaaaaatgtcatttttggtgcaggtaatctgaaagccaaagtgatgtttataggcgat
aatccaggtgttagcgaagatgaaacaggaatgctctttacgggtaaaagcggcgaattg
cttgcaaatatgatcgaaaaagttcttttgattcccaaagaagatgtctatgtcaccacg
attttaaagtgtaaaacaccggataatcgcgttccaacacctgaagaagtcgcttgttgc
aaaccttacgtgatgcaacagattcaaaccattcgaccacaaattatcgtcgcacttgga
tcgaccagttttcatcatctcacaggagagtatgatacacccattgataaaatacgtggc
actgtgctcaattttggtgaagccaaattgattcccacgttccacccaagttttttactg
cgaaaccctagcgctaaaaaagaggtttatgcagatatgctaaaaataaggagcatgtta
tga
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