Streptococcus suis SS12 (serotype 1/2): SSU12_0122
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Entry
SSU12_0122 CDS
T02025
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase beta' chain
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
suo
Streptococcus suis SS12 (serotype 1/2)
Pathway
suo03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
suo00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SSU12_0122 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
suo03021
]
SSU12_0122 (rpoC)
03400 DNA repair and recombination proteins [BR:
suo03400
]
SSU12_0122 (rpoC)
Enzymes [BR:
suo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SSU12_0122 (rpoC)
Transcription machinery [BR:
suo03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SSU12_0122 (rpoC)
DNA repair and recombination proteins [BR:
suo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SSU12_0122 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
AER14321
LinkDB
All DBs
Position
114750..118397
Genome browser
AA seq
1215 aa
AA seq
DB search
MVDVNRFKSMQITLASPSKVRSWSYGEVKKPETINYRTLKPERDGLFDEVIFGPTKDWEC
SCGKYKRIRYKGITCDRCGVEVTRAKVRRERMGHIELKAPISHIWYFKGIPSRMGLTLDM
SPRALEEVIYFAAYVVIDPKDTPLEHKSIMTEREYRERLREYGYGSFVAKMGAEAIQDLL
KQVDLPKEIAALKEELKTASGQKRIKAVRRLDVLDAFYKSGNKPEWMILNILPVIPPDLR
PMVQLDGGRFAASDLNELYRRVINRNNRLARLLELNAPGIIVQNEKRMLQEAVDALIDNG
RRGRPITGPGSRPLKSLSHMLKGKQGRFRQNLLGKRVDFSGRSVIAVGPTLKMYQCGVPR
EMAIELFKPFVMREIVARDIAGNVKAAKRLIERGDDRIWDILEEVIKEHPVLLNRAPTLH
RLGIQAFEPVLIDGKALRLHPLVCEAYNADFDGDQMAIHVPLSEEAQAEARILMLAAEHI
LNPKDGKPVVTPSQDMVLGNYYLTMEDAGREGEGMVFKDADEAVMAYRNGYVHLHTRVGI
ATDSLDKPWKDNQKHKVMMTTVGKILFNAIMPEGLPYLQEPNNANLTEGTPDKYFLEPGS
DIKAAIAELPINPPFKKKNLGNIIAEIFKRFRTTETSALLDRLKDLGYYHSTLAGLTVGI
ADIPVIDNKAEIIEESHERVEQIKKQFRRGMITDDERYAAVTDEWRSAKEKLEKRLVEKQ
DPKNPIVMMMDSGARGNISNFSQLAGMRGLMSAPNGRIMELPILSNFREGLSVLEMFFST
HGARKGMTDTALKTADSGYLTRRLVDVAQDVIIREDDCGTDRGLDIRSITDGKEMIEPLE
ERLQGRYTKKTVKHPETGAVIIGPNQLITEDIAREIVNAGVEQVTIRSVFTCNTRHGVCR
HCYGINLATGDAVEVGEAVGTIAAQSIGEPGTQLTMRTFHTGGVASNSDITQGLPRVQEI
FEARNPKGEAVITEVKGEVIAIEEDASTRTKKVFVKGKTGEGEYVVPFTARMKVEVGDQV
ARGAALTEGSIQPKRLLEVRDVLAVETYLLSEVQKVYRSQGVEIGDKHIEVMVRQMLRKV
RVMDPGDTDLLMGTLMDITDFTDANAEVVIAGGIPATARPVLMGITKASLETNSFLSAAS
FQETTRVLTDAAIRGKRDNLLGLKENVIIGKIIPAGTGMARYRNLEPQAINEVEIIEDTV
AEELAAEAELEAVTE
NT seq
3648 nt
NT seq
+upstream
nt +downstream
nt
gtggttgacgtaaatcgatttaaaagtatgcaaatcacgttagcttcaccaagtaaggtt
cgttcatggtcttacggtgaggttaaaaaacctgaaacaatcaactatcgtacacttaaa
ccagaacgtgatggactttttgacgaagtcatcttcggtccaacaaaagactgggagtgt
tcatgtggtaaatacaagcgtatccgttataaagggattacttgtgaccgctgtggtgta
gaagtgactcgtgcaaaagtacgtcgtgaacgtatgggacacattgagttgaaagcacca
atttcacacatttggtatttcaaaggtattccaagtcgtatgggcttgaccttggatatg
agcccacgtgcgcttgaggaagttatctacttcgcagcttacgtggtgatcgatccgaaa
gatacaccgcttgagcacaagtcaatcatgacagagcgcgaataccgtgagcgtttgcgt
gaatatggttatggttcattcgttgccaaaatgggtgcagaagcgatccaagacctcttg
aaacaagtcgatcttccaaaagaaatcgcagctttgaaagaagaattgaaaacagcttct
ggtcaaaaacgcattaaagcagttcgccgcttggatgtattggatgctttctataaatct
ggtaacaagcctgagtggatgattctcaatatccttccagttattccaccagatttgcgt
ccgatggttcagttggatggtggccgttttgccgcatctgacttgaacgaactctaccgc
cgtgttatcaaccgtaacaaccgtttggctcgtctcttggaacttaatgctccaggtatc
atcgtacaaaacgaaaaacggatgctccaagaagctgtggatgctttgattgacaacggt
cgccgtggtcgtccaattacaggaccaggtagccgtccacttaaatcactcagccacatg
cttaaaggtaagcaaggacgattccgtcaaaacttgcttggtaagcgtgttgacttctca
ggccgttccgttatcgccgttggtccaactcttaaaatgtaccaatgtggtgtaccacgt
gaaatggctatcgagctcttcaaaccgtttgtcatgcgcgaaatcgttgcccgtgatatt
gctggaaacgtaaaagctgcaaaacgtttgattgagcgtggtgatgatcgtatttgggat
atcttggaagaagtgatcaaagaacacccagttcttttgaaccgcgcacctacccttcac
cgtttgggtatccaggcttttgagccagttctaatcgacggtaaagcccttcgtttgcac
ccgcttgtctgtgaagcctacaacgccgactttgacggtgaccagatggcgattcacgtt
ccattgtcagaagaagcacaagcagaagcacgtatccttatgcttgcggcagaacacatc
cttaaccctaaagatggtaaacctgtcgtaacaccatctcaggatatggttttgggtaac
tactacttgaccatggaagatgctggtcgtgaaggtgaaggtatggtcttcaaggatgcg
gatgaggctgttatggcttaccgcaatggctatgttcacttgcatactcgtgttggtatc
gcaacagatagcctcgataaaccttggaaagacaaccaaaaacacaaggtcatgatgaca
actgtcggaaaaatcttgttcaacgcaattatgccagaaggtcttccatacttgcaagag
ccaaacaatgctaacttgacagaaggaactcctgataaatacttcttggaaccaggatca
gatattaaggctgccattgcagaattgccaatcaacccaccattcaagaagaaaaatctt
ggtaacatcatcgctgaaatcttcaagcgtttccgtacaactgaaacatcagcccttctt
gaccgtttgaaagacttgggttattatcactcaacactcgctggtttgacagtgggtatt
gccgatatcccagttatcgacaacaaggctgaaatcattgaagaatctcacgaacgtgta
gaacaaatcaagaaacaattccgtcgtggtatgattactgacgatgagcgctatgcagct
gttacagatgaatggcgttcagctaaggaaaaattggaaaaacgcctggttgaaaaacaa
gatcctaagaacccaatcgttatgatgatggactctggtgcccgtggtaacatctccaac
ttctcccagttggccggtatgcgtggtctgatgtcagctccgaacggacgtatcatggaa
ttgccaatcttgtctaacttccgtgaaggtctttcagtattggaaatgttcttctcaact
cacggtgcccgtaagggtatgacggatacggccttgaagacagccgactcaggttacttg
actcgtcgtttggttgacgttgcccaagacgttattatccgtgaagacgactgtggaaca
gaccgtggtcttgacatccgttcaatcacagatggcaaggaaatgatcgagccacttgaa
gagcgtttgcaaggtcgttacactaagaaaactgttaaacatcctgaaacgggtgccgtt
atcattggtccaaaccaattgattacggaagatattgcccgtgaaattgtcaatgcaggt
gttgaacaagtaaccatccgtagcgtatttacatgtaacactcgtcacggtgtctgccgt
cattgttatggtatcaacttggcgacaggtgatgcggttgaagtgggtgaagcagttggt
acaatcgctgcccaatcgatcggtgagcctggtacacagcttacaatgcgtaccttccac
acgggtggtgtagcctcaaacagcgatattacgcagggtcttcctcgtgtccaagagatc
tttgaagcccgtaacccgaaaggggaagcggttatcactgaggttaaaggtgaagttatc
gctattgaagaagatgcttctactcgtaccaagaaagtctttgttaaaggtaaaactggc
gaaggcgaatatgtggttccatttacagcccgtatgaaggttgaagttggggaccaagtc
gcgcgtggagcagcccttaccgaaggttctatccaaccaaaacgcttgcttgaagtccgt
gatgtcttggcggttgaaacttaccttctttctgaagttcaaaaagtttaccgtagccag
ggtgtagaaatcggcgacaagcacatcgaggtaatggttcgtcaaatgcttcgtaaagtt
cgtgtcatggatccaggtgacacagatcttctcatgggtaccctcatggatatcacagac
tttacagatgccaatgcggaagtggttattgcgggtggtattccggcaacagctcgtcca
gttcttatgggtatcacgaaggcttcccttgaaaccaactcattcttgtctgccgcatcc
ttccaagaaacaactcgcgttcttacagatgcagctattcgtggtaaacgtgacaacctt
ctcggtcttaaagagaacgttatcatcggtaagattatcccagcaggtacaggtatggcc
cgctaccgtaatcttgaaccacaagccatcaatgaagttgaaatcattgaagacacagta
gcagaagagcttgctgcagaagcagagcttgaagctgtaactgaataa
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