KEGG   Candidatus Solibacter usitatus: Acid_3563Help
Entry
Acid_3563         CDS       T00412                                 

Definition
(GenBank) ATP dependent DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
sus  Candidatus Solibacter usitatus
Pathway
sus03030  DNA replication
sus03410  Base excision repair
sus03420  Nucleotide excision repair
sus03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:sus00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    Acid_3563
   03410 Base excision repair
    Acid_3563
   03420 Nucleotide excision repair
    Acid_3563
   03430 Mismatch repair
    Acid_3563
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:sus03032]
    Acid_3563
   03400 DNA repair and recombination proteins [BR:sus03400]
    Acid_3563
Enzymes [BR:sus01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     Acid_3563
    6.5.1.6  DNA ligase (ATP or NAD+)
     Acid_3563
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     Acid_3563
DNA replication proteins [BR:sus03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    Acid_3563
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     Acid_3563
DNA repair and recombination proteins [BR:sus03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     Acid_3563
   NER (nucleotide excision repair)
    Other NER factors
     Acid_3563
   MMR (mismatch exicision repair)
    Other MMR factors
     Acid_3563
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C
Motif
Other DBs
NCBI-ProteinID: ABJ84535
UniProt: Q020V4
LinkDB All DBs
Position
4509807..4511384
Genome map
AA seq 525 aa AA seqDB search
MKAFAELYAALDQTTKTNAKVDALKRYLAAAAPEDAAWAVNFLIGRRPKRLLESRKLAQW
AIEEAGVPDWLFSECYHAVGDFAETIALLLPPAAASSALALHHWIEDRLLPLRDADDETR
RQHLVEAWREMDEGQRFAWNKLLTGEFRVGVSQTLVVRAIAEFSGIAPEVMAHRLMGEWQ
PTPEFWRQLVAPDTRDADISRPYPFCLAYPVEGDVGELGDPGEWQIEWKWDGIRAQLIRR
QWRTFLWSRGEELITDRFPELEALGAQLPEGTVIDGEVLPWKEGAPLPFAQMQRRIGRKV
LGPKILAEVPVVLVAYDLLELNGQDIRERPLEWRRASLQSLAPPDSALVVSPTVNEPTWD
ALRQLREQSRARKVEGFMLKRLGSPYRVGRRRGDWWKWKINPYSVDCVLIYAQPGNGRRA
SLFTDYTFGVWDDGKLVPFAKAYSGLTDEEIREVDAFVRRNTIEKFGPVHAVKPELVFEL
AFEAIQRSPRHKSGIAVRFPRMARWRKDKPAEEADSLDTIRALLA
NT seq 1578 nt NT seq  +upstreamnt  +downstreamnt
atgaaggccttcgccgaactctacgccgcgctcgatcaaaccaccaagaccaacgccaag
gtcgatgcgctcaagcgctacctggccgcggccgcgcccgaggatgccgcgtgggcggta
aacttcctcatcggccgccgccccaagcgcctgctggaatcgcgcaagctcgcgcaatgg
gccatcgaagaagccggagttcccgactggctgttctccgagtgttaccacgctgtgggc
gatttcgccgagactatcgcgctcctgctgccgccggccgctgcttccagtgcgctcgct
ctgcatcactggatcgaagaccgcctccttcccctgcgcgatgccgacgatgaaacccgc
cgccaacacctggtggaggcctggcgcgagatggacgaaggccagcgcttcgcctggaac
aaactcctcaccggcgagtttcgcgtgggtgtctcgcagaccctggtcgtccgcgcgatc
gccgagttcagcggcatcgcccccgaagtcatggcgcatcgcctgatgggcgagtggcag
ccgacgcctgagttttggcggcagttggtagcgcccgacacgcgcgacgccgatatcagc
cgcccttaccccttctgtctggcctatccggtggagggcgatgtcggcgaacttggcgac
ccgggcgagtggcagatcgagtggaagtgggacggtattcgcgcgcagctgatccgccgc
cagtggcgcaccttcctgtggtcgcgcggcgaggagttgatcaccgaccgctttcccgaa
ctggaggctctgggcgcgcagcttcccgaaggcaccgtgatcgacggcgaagtgctcccg
tggaaggagggcgcgccgctgccgttcgcgcagatgcagcggcgcatcggccgcaaggtg
ctcggcccgaagatcctcgccgaagtcccggtggtgctggtggcgtacgacctattggaa
ctcaacggccaggatatccgcgagcgtccgctggagtggcggcgagccagcctgcaatcg
ctcgcgccccccgattccgcgctggtggtctcaccaaccgtgaatgaacccacatgggat
gcacttcgccagttgcgcgagcagtcgcgcgcccgcaaggtcgagggcttcatgctgaag
cggctcggctcaccctatcgcgtggggcgccgccgcggtgactggtggaagtggaagatc
aacccctactccgtggattgcgtcctgatctacgcgcagcccggcaacggccgccgcgcc
agtcttttcacggactacaccttcggtgtctgggacgatggaaagttggtgcccttcgcg
aaggcctattccggcctgaccgacgaagagatccgcgaagtggacgccttcgtgcggcgt
aacacgattgaaaagttcggcccggtccacgcggtgaagccggaactcgtcttcgaactg
gccttcgaagccatccagcgctccccgcgccacaaatccggcatcgccgtccgcttcccc
cgcatggcccgctggcgtaaagacaaacctgcggaagaagccgacagcctcgacacgatc
cgggcactgttggcttag

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