Candidatus Solibacter usitatus: Acid_7844
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Entry
Acid_7844 CDS
T00412
Name
(GenBank) ATP dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
sus
Candidatus Solibacter usitatus
Pathway
sus03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
sus00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Acid_7844
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sus03400
]
Acid_7844
Enzymes [BR:
sus01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Acid_7844
DNA repair and recombination proteins [BR:
sus03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Acid_7844
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
ABJ88740
UniProt:
Q01NN0
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All DBs
Position
9839542..9841434
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AA seq
630 aa
AA seq
DB search
MPAEMPASIEPMKATIAERVPRGDEWLFEIKWDGVRAVAFLDNEEVRLQARSGLRCERQY
PELAVLPHHVAAARAILDGEIAVLDAKGVSQFHLIQPRIANSDPNTIAHLVRSTPVVYFA
FDLLYLDGYDLRNVDLAKRRELLERVLTPGAQVRVSDVFPGAGEALLEAARENGLEGIIA
KHPRSCYESRRSREWLKIKIVTEQEFVIGGFTEPQGDRQYFGALVLGVQKAGALRWVGNV
GTGFDQKLLASLYARLEPLITTKCPFVERPKPDRGMTWVRPELVCQVKYGNWTPDDRLRA
PVFIGLRNDKPVVEVEKETTGELLPKSKEATLPIDGRTLKFTNLSKLYYPDDGVSKRDVI
NYYDSVADLILPHLRDRPLSLKRYPNGIKEDFFFQKNTPETYPAWMRTELIDSDHAGAIN
YVFADDRASLLYLVNLGCIDQNPWISRSGSLDNPDFVLIDLDPQECAYDLIVEAAVMVKE
ILDRIGLKGYPKTTGGDGMHVYIPVEAVYSYEETRIFAELIARLVTQRKPQMYTTPRSVS
KRQKNRVYFDYLQNGKSKTIAAPYVLRAYPGAPVATPLEWSEVKPGLDPKQFHIGNARER
FRKKGDLFRGVLDAPQNLYDALGKLEKLFR
NT seq
1893 nt
NT seq
+upstream
nt +downstream
nt
atgcctgcggaaatgccggcgtcgatcgagccgatgaaggcgacgattgccgagcgcgtg
ccgcgtggggacgagtggctgttcgagattaaatgggatggggtgcgagcggtcgctttt
ttggataacgaagaagtgcggctgcaggcgcggagcggattgcgctgcgagcggcaatac
ccggagctggcggtgctgccgcatcacgtggccgcggcgcgcgcgattctggacggcgaa
atcgcggtgctggatgccaaaggcgtttcccagtttcatttgattcagccgcgcatcgcg
aatagcgatccgaatacgattgcccatctggtgcgctccacgccggtggtgtatttcgcg
ttcgacctgctctacctggatggctacgatctgcgcaacgtggacctggcgaagcgtcgc
gaactgttggagcgagtgctgacgccgggagcgcaagtacgagtctccgatgtgtttccc
ggcgcgggagaggccctgctggaagcggcacgggagaacgggctcgagggcatcatcgcc
aagcatccgcggagctgctacgaatccaggcgaagccgcgagtggctaaagatcaagatt
gtcaccgagcaggaattcgtgatcggcgggttcacggaaccccaaggcgaccggcagtac
ttcggcgcgcttgtgctgggggtgcaaaaggcgggcgccctgcgctgggtcggcaatgtg
ggcacgggcttcgatcaaaagctgctggcgagcctatacgcgcggctcgagccactgatc
accactaagtgcccgttcgtcgagcggcccaagccggatcgagggatgacgtgggtaagg
ccggagctggtatgccaggtgaaatacggcaactggaccccggacgaccggctgcgcgca
ccggtcttcatcgggctgcgcaacgacaagcccgtggtggaggtggagaaagagacgacg
ggtgaactgcttccgaagagcaaggaggcgacgctaccgatcgacgggcgcacgctcaag
ttcacgaatctctctaagctgtattaccccgacgatggggtcagcaagcgggacgtgatc
aactactacgactcggtggcggatttgattctgccgcatctgagagaccggccgctttct
ctgaagcgatatccgaacggcatcaaggaggattttttcttccaaaagaatacgccggag
acgtatcctgcgtggatgcggacggagctgatcgacagcgaccacgcgggggcgatcaac
tacgtgttcgcggatgaccgggcaagcctgctgtacctggtgaatctgggatgcatcgac
cagaatccgtggatcagccggtcgggatcgctggacaatccggatttcgttctaatcgac
ctggatccgcaagagtgcgcatacgatttgattgtggaagcggcggtgatggtgaaggaa
attctagaccggatcgggctgaagggttatccgaagacaacaggcggggacgggatgcac
gtgtacattccggtggaagcggtgtacagctatgaggagacgcggatcttcgcggaactg
atcgcgcggctggtgacgcagcggaagccgcagatgtacacaacgccgcgctcggtgagc
aagcgacagaagaaccgggtgtatttcgattacttgcagaacgggaaatcgaagacgatc
gcggcgccgtatgtgctgcgggcgtaccctggggccccggtggcaactccgctggagtgg
agcgaggttaagcccgggctggacccgaagcagtttcacatcgggaatgcacgggagcgg
ttccggaagaagggcgatctgttccgtggagtgttggatgcgccgcagaatctttacgat
gcgctgggcaagctggagaagcttttccggtaa
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