KEGG   Sulfurifustis variabilis: SVA_1768Help
Entry
SVA_1768          CDS       T05321                                 

Definition
(GenBank) DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
sva  Sulfurifustis variabilis
Pathway
sva03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:sva00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    SVA_1768
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:sva03400]
    SVA_1768
Enzymes [BR:sva01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     SVA_1768
DNA repair and recombination proteins [BR:sva03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     SVA_1768
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S
Motif
Other DBs
NCBI-ProteinID: BAU48322
UniProt: A0A1B4V6W0
LinkDB All DBs
Position
complement(1801674..1804121)
Genome map
AA seq 815 aa AA seqDB search
MKLDVYRRKRNFERTPEPSGGRAVSRRRFRYVIQKHGARRLHYDLRLELNGTLKSWAVPR
GPSLDPREKRLAVHVEDHPIEYGKFEGVIPRKQYGAGPVLVWDRGVWKPEGDPEEGYRRG
RLRFELEGEKLRGGFSLVRSGSPGDKENWLLIKRDDEFASSIEITDAMPYSVQTGRTLED
VAEQRARPRASPAPPRRFAPELATLVERPPSGPEWLHEIKYDGYRVLCRLEDGRARLYSR
NGNDLTKRMAAIARAIERLPGLADGWLDGEVVALSADGRTSFPALQSALSDGRDQDLIYY
LFDLPWWNGRDLRGEPLTARKQRLATLLSAHSGGTQLRVSDHVRGKGDVFYQQACAFGLE
GVVSKRIDAPYRNGRTTDWLKAKCRLRQEFVVGGYTDPAGGRAGLGALLLGLYESDAGLR
YCGRVGTGFDDRTLRELRARFGELETKEPPFASPLPREARKGAHWVRPQTVVDVEFAGWT
HEGYVRQASYQGVREDKRPRDVVRELPQALAPSGPPPANGRRVRITNADKVLYPEQGVTK
EELALYYEAVGEWMLPHVVRRPLTLLRCPEGPHKQCFWQKHATRGMPEELRRVPIAEHGG
KDVETYLAVDSLQGVLALVQMGVLEIHVWGSRIDRPDQPDRLIFDIDPDPSLGWDAVLEA
VALVYARVLDLGLAGFVRTTGGKGLHVVVPIARRHDWDEAKAFSKALADDIVRRNPGRYT
SRLALSARKQKVFIDYLRNARGATAVTNYSTRAKPHAPVAVPLAWEELDSELRSDRYNVR
NVYERLRALKRDPWEDFDAARRAITARMKREMGML
NT seq 2448 nt NT seq  +upstreamnt  +downstreamnt
atgaagctcgacgtctatcgtcgcaagcggaacttcgaacggacgccggagcccagcggc
gggcgggccgtgtcccgccggcggtttcgctacgtgatccagaagcacggtgcccgccgc
cttcactacgatctgcggctggagctcaacgggacgctcaagagctgggcggtgccgcgg
ggcccgagtctcgacccgcgcgagaagcgactggcggtgcacgtcgaggatcacccgatc
gagtacggcaagttcgagggcgtgatcccccgcaagcagtacggcgccggaccggtgctg
gtgtgggaccgcggcgtgtggaagcccgaaggcgatcccgaggaaggctaccgccgcgga
cgcctgcgcttcgagctggaaggcgagaagctccggggcggcttcagcctggtgcgttcc
ggcagccccggcgacaaggagaactggctgctcatcaagcgcgacgacgagttcgcgagc
agcatcgagatcacggacgcgatgccgtacagcgtccagacgggccgcacgctggaggat
gtcgcggagcagcgggcccggccgcgcgccagtccggcgccgccgcgccgcttcgcgccg
gagctggcgaccctcgtggagcgaccgccgtccgggccggagtggctgcacgagatcaag
tacgacggctatcgcgtactctgccggctcgaggacggccgcgcgcggctttacagccgc
aacgggaacgacctgacgaagcgcatggcggcgatcgcgcgggcgatcgagcgcctgccc
gggctcgccgacggctggctcgacggcgaggtcgtcgcgctgtccgcggacgggcgcacg
agcttccccgccctgcagtccgccctttccgacgggcgcgaccaggatctcatctactac
cttttcgatctcccgtggtggaacggccgcgacctgcgcggcgagccgctgaccgcgcgc
aagcagcggctggcgaccctgctgtcggcgcactcgggcggcacgcagctgcgcgtgagc
gaccacgtccgcggcaagggcgacgtgttctaccagcaggcgtgcgccttcgggctcgaa
ggcgtggtatccaagcggatcgacgcgccctaccgaaacggccgcacgaccgactggctc
aaggccaagtgccgattgcgccaggagttcgtggtcggcggctacaccgatcccgccggc
gggcgcgccggcctcggcgccctgctgctcgggctctacgagtcggatgccgggctgcgt
tactgcgggcgggtcgggacgggcttcgacgacaggacgctgcgcgagctgcgagcgcgg
ttcggcgagctcgaaacgaaggaaccgccgttcgcgtcgccgctgccgcgcgaggcgcgc
aagggcgcgcactgggtgcggccgcagacggtcgtcgacgtcgagttcgcgggatggacg
cacgaagggtacgtacgccaggcgtcctaccagggcgtgcgggaggacaagcggccgcgg
gacgtcgtgcgcgagctcccgcaggccctcgccccctccggtcccccgccggcgaacggc
aggcgcgtacggatcaccaacgccgacaaggtgctctacccggagcagggagtgaccaag
gaggagctcgctctttattacgaggcggtcggcgagtggatgctgcctcacgtcgtgcgt
cgcccgctcacgctcttgcgctgccccgaaggcccgcacaagcagtgtttctggcagaag
cacgcgacgcggggcatgcccgaggagctccggcgcgtgccgatcgcggagcacggcggc
aaggacgtggagacgtatctcgccgtcgattcgctgcagggcgttctggcgctggtgcag
atgggcgtgctggagatccacgtatggggatcgcgcatcgaccggcccgatcaacccgat
cgcctcatcttcgatatcgacccggatccctcgctcgggtgggacgccgtgctggaggcg
gtcgccctggtgtacgcgcgcgtgctggacctcggtctcgccgggttcgtgcgcacgacc
ggcggaaagggcctgcacgtcgtcgtgccgatcgcgcgccgtcacgactgggacgaagcg
aaggcattctcgaaggcgctcgccgacgacatcgtgcgccggaatccggggcgctacacg
tcgcgcctcgcgctgtcggcgcgcaagcagaaggtattcatcgattacctgcgcaacgcc
cgcggcgcgaccgccgtgacgaattactcgacccgggcaaagccgcacgcgccggtggcg
gtcccgctcgcgtgggaggagctcgacagcgagctgcgttccgaccggtacaacgtgcgc
aacgtctacgagcgcctgcgcgcgctgaagcgcgatccgtgggaggacttcgacgcggcc
cgccgcgcgatcaccgcccggatgaagcgcgagatgggaatgctttaa

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