Shewanella violacea: SVI_0479
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Entry
SVI_0479 CDS
T01206
Symbol
orn
Name
(GenBank) oligoribonuclease
KO
K13288
oligoribonuclease [EC:3.1.-.-]
Organism
svo
Shewanella violacea
Brite
KEGG Orthology (KO) [BR:
svo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
svo03019
]
SVI_0479 (orn)
03009 Ribosome biogenesis [BR:
svo03009
]
SVI_0479 (orn)
Messenger RNA biogenesis [BR:
svo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SVI_0479 (orn)
Ribosome biogenesis [BR:
svo03009
]
Eukaryotic type
Pre-60S particles
RNases
SVI_0479 (orn)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
RE_XamI
Motif
Other DBs
NCBI-ProteinID:
BAJ00450
UniProt:
D4ZFK1
LinkDB
All DBs
Position
545611..546156
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AA seq
181 aa
AA seq
DB search
MVVDANNLIWVDLEMTGLDPETDRVIEIATIVTDKELNILAEGPVIAIHQTDEQLATMDD
WNQKHHGESGLVERVRSSQYNEDDAIAMTIKFISQYVPQGVSPMCGNSIGQDRRFMNKYM
GKLEDYFHYRNIDVSTIKELTRRWKPELMDGFTKQGTHKALVDIQESIAELQYYRAKVFK
I
NT seq
546 nt
NT seq
+upstream
nt +downstream
nt
atggttgtagatgcaaacaatctcatttgggtagatttagagatgacagggttagatccc
gagaccgatagggtcatagagatcgcaacaatagtgacagataaagagttaaatattctt
gctgaaggacctgtaattgcgattcatcagactgatgaacaacttgcaacaatggacgac
tggaaccaaaagcaccatggggagtcaggattagtcgagcgagtgcgtagtagtcagtat
aatgaagatgatgccattgcaatgaccataaagtttatttctcaatatgtccctcagggc
gtatcacctatgtgcggtaacagcatagggcaagatagacgctttatgaataagtacatg
ggaaagttagaagactattttcactatcgtaatatagatgtaagtaccatcaaggaactt
actagacgttggaagccagagcttatggacggctttactaagcaaggaacacacaaagct
ctagtggatatccaggaatctattgccgaattgcagtattatcgagcaaaagtattcaaa
atttga
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