Shewanella violacea: SVI_2994
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Entry
SVI_2994 CDS
T01206
Name
(GenBank) DNA-binding protein, HU family
KO
K03530
DNA-binding protein HU-beta
Organism
svo
Shewanella violacea
Brite
KEGG Orthology (KO) [BR:
svo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
svo03032
]
SVI_2994
03036 Chromosome and associated proteins [BR:
svo03036
]
SVI_2994
03400 DNA repair and recombination proteins [BR:
svo03400
]
SVI_2994
DNA replication proteins [BR:
svo03032
]
Prokaryotic type
DNA Replication Initiation Factors
Initiation factors (bacterial)
SVI_2994
Chromosome and associated proteins [BR:
svo03036
]
Prokaryotic type
Nucleoid associated proteins
HU (heat unstable protein)
SVI_2994
DNA repair and recombination proteins [BR:
svo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Supressor
SVI_2994
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bac_DNA_binding
HU-HIG
HU-CCDC81_bac_2
Motif
Other DBs
NCBI-ProteinID:
BAJ02965
UniProt:
D4ZAC0
LinkDB
All DBs
Position
complement(3394979..3395251)
Genome browser
AA seq
90 aa
AA seq
DB search
MNKSELIEKIASGADISKAAAGRALDSFIGAVTDGLKDGDKISLVGFGTFEVRQRAERTG
RNPQTGAEIKIAAANIPAFKAGKALKDAVN
NT seq
273 nt
NT seq
+upstream
nt +downstream
nt
atgaacaaatctgaactaatcgagaaaatcgcttctggtgctgacatttctaaagcggct
gcaggccgtgcattagactctttcatcggcgcagtcactgacggccttaaagatggcgat
aagatttctcttgttggtttcggtacttttgaagtgcgtcaacgtgctgagcgtactggt
cgtaacccacagacgggtgctgagatcaagattgctgcagcaaacattcctgccttcaaa
gcaggtaaagcactaaaagacgctgtaaactaa
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