KEGG   Streptomyces violaceoruber: B1H20_25010Help
Entry
B1H20_25010       CDS       T05124                                 

Definition
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
svu  Streptomyces violaceoruber
Pathway
svu03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:svu00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    B1H20_25010
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:svu03400]
    B1H20_25010
Enzymes [BR:svu01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     B1H20_25010
DNA repair and recombination proteins [BR:svu03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     B1H20_25010
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Other DBs
NCBI-ProteinID: ARF64276
UniProt: A0A1V0UGR3
LinkDB All DBs
Position
complement(5677831..5678721)
Genome map
AA seq 296 aa AA seqDB search
MTPMTEVEGRRIPLSNLDKVLYPATGTTKGEVLHYYAATAGDVILPHLRDRPVSFLRYPD
GPGGQLFFTKNPPPGTPTWVATAPVPHSEDRSARQPVVGDLASLMWAANLVVEFHTPQWR
TGAPGIADRLVLDLDPGAPATVVECCAVALWLRERLAADGLTAYGKTSGSKGLHLLVPLE
PTPSEAASAYAKRLAQEAEAALPELALHRMKRALRPGKVFVDFSQNAASKTTATPYTLRA
RPEPTVSAPVTWDEIAGCREPGALVFRAGDMAGRLERYGDPLAPLNDPEQARPLPG
NT seq 891 nt NT seq  +upstreamnt  +downstreamnt
atgacgccgatgaccgaggtggaggggcgacggatcccgctcagcaatctcgacaaggtt
ctgtatccggccaccgggacgaccaagggcgaggtgctgcactattacgcggccacggcg
ggcgacgtgatcctgccccacctgcgcgaccgcccggtctccttcctgcggtacccggac
gggcccggcggccagctcttcttcaccaagaatccgccgcccggtacgcccacctgggtg
gccacggcccccgtcccccacagcgaggaccggtccgcccggcagccggtcgtgggcgat
ctggcctcgctgatgtgggcggccaacctggtggtggagttccacaccccgcagtggcgc
accggcgcaccggggatcgccgaccggctggtcctcgacctggaccccggcgcgcccgcg
accgtcgtggagtgctgcgcggtggcgctctggctgcgggaacgcctcgcggccgacggg
ctgacggcgtacgggaagacgtccgggtccaaggggctgcacctgctcgtcccgctggag
cccaccccgagcgaggcggcgtccgcgtacgcgaaacggctcgcccaggaggcggaggcc
gcccttccggagctggccctgcaccggatgaagcgcgccctgcggcccggcaaggtcttc
gtggacttcagccagaacgccgcgtcgaagacgaccgccacgccgtacacgctgcgcgcc
cgccccgagccgaccgtctccgccccggtcacctgggacgagatcgccgggtgccgggag
cccggggcgctggtgttccgggccggggacatggccggccggctggagcggtacggcgat
ccgctcgccccgctgaacgacccggagcaggcgcgtccgctgccgggatga

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