KEGG   Sphingomonas wittichii: Swit_3982Help
Entry
Swit_3982         CDS       T00538                                 

Definition
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
swi  Sphingomonas wittichii
Pathway
swi03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:swi00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    Swit_3982
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:swi03400]
    Swit_3982
Enzymes [BR:swi01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     Swit_3982
DNA repair and recombination proteins [BR:swi03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     Swit_3982
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S RNA_ligase
Motif
Other DBs
NCBI-ProteinID: ABQ70327
UniProt: A5VDG1
LinkDB All DBs
Position
4371700..4374213
Genome map
AA seq 837 aa AA seqDB search
MARLDEYNRKRDFAKTREPAGTLETRGRHRFIVQKHDATRLHYDFRLEMDGVLKSWAVTR
GPSLDPDDKRLAVRTEDHPVSYGGFEGTIPEGEYGGGTVMLWDEGSWAPIAGKSERDLDK
GHLHFTLDGHRMKGEWLLVRIKGRPGEKRENWLLRKIDDGEAGGSDDLVAHALTSVKTGR
TMAQIAADKAGESSLKGKRGKAFDAIMAKSDAHNARVARRPAKGKPSTTPPPAFRKPQLA
TLVDHVPTGGAWIHEIKFDGYRALVAVAGDRVKIFTRTGLDWTDRFAPVAEAVAALGLPP
ALIDGEIVSLDGAGNPSFSALQKAIKGEGGGGGGFELFAFDLLSLDGDDLTGLGTVERKA
RLAGLLPRSHPMIHYADHVVGAGEKLFDAMCRAGQEGIISKRADARYRAGRTTNWLKTKC
TRRQEFVIIGWSRSDSAARPFRALLLAQQGEDGLVYAGKVGTGFDRATMEMLAEKFVARA
RKTPPADVPRAEARGTSWVRPDLVAEIGFAEFTDEGILRQASFIGLRSDKEAAEVTAEKP
MPVEEAARPEEAPVKISNPDRVIFPEAKATKGDLARYYQAVGPIILPWLAHRPVSLVRCP
QGRAKQCFFQKHDSGSFGEHVHHVPIREKDGKTEDYLYVDDVAGILACVQMGTIEFHGWG
SRVERIEMPDRMIFDLDPDVGLDFADVRTAAKDIRRLLSDIGLTSFAMLSGGKGVHVVVP
LRPEAEWPAVKDFAHRFAEAMAQAEPDRFVATMAKAKRVGRIFIDYLRNQRGATAVVPYG
ARARENAPVAAPVAWNELDDFDKAGAFTIKDADRLLKRASSKALKGWGVADQVLPDL
NT seq 2514 nt NT seq  +upstreamnt  +downstreamnt
atggcccggctcgacgaatataaccgcaagcgcgacttcgcgaagacgcgcgagccggcc
ggcaccctggagacgcgcggacgccaccgcttcatcgtccagaagcacgacgcgacccgg
ctgcactatgacttccggctggagatggacggcgtgctcaagagctgggcggtgacgcgc
ggccccagcctcgaccccgacgacaagcggctggcggtccgcaccgaggaccatccggtg
tcctatggcggtttcgaggggaccattcccgaaggcgaatatggcggcggcacggtgatg
ctgtgggacgagggcagctgggcgccgatcgcgggcaagagcgagcgcgacctcgacaag
ggccatctccacttcaccctcgacggccatcggatgaagggcgaatggctgctcgtccgg
atcaaggggcggccgggcgagaagcgcgagaactggctgctccgcaagatcgacgacggc
gaggcgggcggcagcgacgatctcgtcgcgcacgcgctgaccagcgtgaagaccgggcgg
accatggcccagatcgccgccgacaaggcgggcgaatcgagcctgaagggcaagcgcggc
aaggcgttcgacgcgatcatggcgaagtcggacgcgcacaacgcccgggtggcgcggcga
ccggccaaggggaaaccctcgaccacgccgccgccggccttccgcaagccgcagctcgcg
acgctggtcgatcatgtcccgaccggcggcgcctggatccacgagatcaagttcgacggc
tatcgcgccctggtcgcggtggccggggaccgggtgaagatattcacccgcaccggcctc
gactggaccgaccggttcgcgccggtggcggaggcggtcgccgcgctcggcctgccgccg
gcgctgatcgacggggagatcgtcagcctcgacggcgccggcaatcccagcttctccgca
ctgcaaaaggcgatcaagggtgaaggcggcgggggcggcggcttcgagctgttcgccttc
gacctgctctcgctcgacggcgacgacctcaccgggctcggcacggtcgagcgcaaggcg
cggctcgccggactgctgccccgcagccacccgatgatccactatgccgaccatgtcgtt
ggcgcgggcgagaagctgttcgacgcgatgtgccgcgccgggcaggaggggatcatctcg
aagcgcgccgacgcgcgctaccgcgccgggcggacgaccaactggctgaagaccaaatgc
acccggcggcaggagttcgtcatcatcggctggagccggagcgactccgccgcgcgtccc
ttccgcgcgctgctcctcgcgcaacagggcgaggacgggctggtctatgcgggcaaggtc
ggcaccggcttcgatcgcgcgacaatggagatgctggcggagaaattcgtcgcccgcgcc
cgcaagaccccgcccgccgacgttccccgcgccgaggcgcgcggcacgtcgtgggtccgg
cccgacctggtcgccgagatcggctttgccgagttcacggatgaggggatattgcggcag
gcgagcttcatcgggctgcgatccgacaaggaggccgccgaggtgacagcggagaagccc
atgcccgtcgaggaagccgcccggcccgaggaagcgccggtgaagatcagcaaccccgac
cgggtgatcttccccgaggcgaaggcgaccaagggcgatctcgcccgctattatcaggcg
gtcggtccgatcatcctgccctggctggcacaccgtccggtcagcctggtgcgctgcccg
caggggcgggcgaagcaatgcttcttccagaagcatgattcgggcagcttcggcgagcat
gtccaccacgtcccgatccgggagaaggacggcaagaccgaggattatctctatgtcgac
gacgtcgccggcatcctcgcctgcgtccagatggggacgatcgagttccatggctggggc
tcgcgggtcgagcggatcgagatgcccgaccggatgatcttcgatctcgatcccgatgtc
ggcctcgacttcgccgacgttcgcacggcggcgaaggacattcgccggctgctgtccgac
atcggcctgaccagcttcgcgatgctgtcgggcggcaagggcgtgcacgtcgtcgtgccg
ctgcgtcccgaggcggaatggccggcggtgaaggatttcgcgcaccgcttcgccgaggcg
atggcgcaggccgagcccgaccgcttcgtcgcgaccatggccaaggcgaagcgggtcggc
cgcatcttcatcgactatctgcgcaaccagcgcggcgcgaccgcggtggtcccctatggc
gcgcgggcgcgcgagaacgcgcccgtggcggcgccggtggcctggaacgagctcgacgat
ttcgacaaggcgggcgccttcacgatcaaggatgccgaccggctgctcaagcgggcgtcg
tcgaaggcgctcaagggctggggcgtggcggaccaggtgctgccggacctgtga

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