Shewanella piezotolerans: swp_4380
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Entry
swp_4380 CDS
T00791
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent helicase HrpB [EC:
5.6.2.6
]
Organism
swp
Shewanella piezotolerans
Brite
KEGG Orthology (KO) [BR:
swp00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
swp_4380
Enzymes [BR:
swp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
swp_4380
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Gene cluster
GFIT
Motif
Pfam:
HrpB_C
DEAD
Helicase_C
ResIII
AAA_30
Motif
Other DBs
NCBI-ProteinID:
ACJ31025
UniProt:
B8CTB6
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Position
complement(4589297..4591849)
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AA seq
850 aa
AA seq
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MCVIRRHNEPHYKTMPVTSLPIHSLLDPIRHAFNQANQVILEAPTGAGKSTALPLAMLDW
DEIDGKILMLEPRRVAARNVAQFIASQRGCPLGAEVGYRVRGESKVSRDTRLEIVTEGVL
TRMIQNDPELTGIALVIFDEIHERHLTTDLGLALALEIQASFREDLKLLAMSATLSGLPL
SELMPDALTLSSEGRSFPVEQCYRAAPVQSLWIDHMAKVIADALNTQQQGSLLAFLPGQG
EIRRLQSLLAPRLDPNLFIICPLYGSLPTKAQDQAIAPPVTGIRKVVLATNVAESSLTIE
GITQVIDSGYKRQASFNPRTGATRLSLKRISQASAAQRSGRAGRLMAGFSTRLWSQEEHG
RLIKADEPEVMHTDLITMVLDGAYWGVKSLDELPMLTQPSKANEKVSWQLLRSLEMVDDK
RVITAHGRAAYELGCQPRIAHMLLKAQRLSRQESDNNLVMLAAILAGTLEARGRSRKGSD
ISHYFQEALTSEAGKQIRQWLNSLGVRNGSSHTLSMVARQAASDDIAMLLAFAYPDRIAK
QRGASGYQLAGGTGVELANDDSLSGQPWLVVADFQESEGRSNGKVYLAATLNEQLFTDQL
SSLVDTIEYCGWDNIKGRFFAELRRNVGQISLSKTPVKQLDKKLIKNAIVEQVVLNGLAL
LKFDERTEQLRYRVAIASDLDKSHDWPSLDDESLIALLDDWLKPYLDDVRSLAQLQQLDC
YTLLLNLMPWATQQHLDRILPIKWLMATGTHAKIEYDAQKRGRLSVRLQEAFGMQQSPQL
VNGKLVLTMELLSPARRPLALTADLASFWQGPYDHVKKEMKGRYPKHLWPDDPANTQPTK
FTKKKTFSSQ
NT seq
2553 nt
NT seq
+upstream
nt +downstream
nt
atgtgcgttatacgccgccataacgagcctcactacaaaacaatgccagtaacttcatta
cccattcacagcttattagatcctattcgccatgcttttaatcaagcgaatcaagtgata
cttgaggcgcctaccggagccggaaagtcgacggcattacctttggccatgctggactgg
gatgagatcgacggtaaaatcctaatgcttgaaccgcgccgagtcgctgctcgaaatgtt
gcccagtttattgcaagccagcgcggctgcccattgggggctgaggttggctatcgagtt
agaggcgaatcaaaagttagtcgcgatacccggcttgagattgtgacagaaggtgtgctg
acgcggatgatccaaaacgatcctgaattgacaggtattgcgctggtaatatttgatgag
atccatgaacgtcatctaaccactgatttaggtttagctttagcgttagagatccaagcg
agttttcgcgaggatttaaagttactggctatgtcagccaccttgtcgggattaccgcta
agcgagttgatgcctgatgcgctgactctgagcagtgaagggcgcagcttcccggttgag
cagtgctatcgcgccgcacctgtgcaatcgctatggatcgatcacatggcaaaagtgatc
gcagatgccttgaatacccagcaacagggctcattgttggcattcctacctgggcaaggg
gagattaggcggctgcaaagtttacttgcaccgcgtttagaccccaacttatttattatc
tgtccgctgtatggcagcttgccaactaaagcacaggatcaagctattgcgccgccggta
acaggtattcgtaaagtggtactcgccaccaacgtagccgagtctagtttgacgattgag
ggaataacccaggttattgattcaggctataaacgccaagcaagctttaatccaagaact
ggagcgacgcggctatcacttaagcggataagccaagcatccgcggctcaacgtagtggg
cgagctgggcggctcatggctggttttagcactcgattgtggagccaagaggagcatgga
cgattgataaaggctgatgagcctgaggtcatgcataccgatctcattacgatggtatta
gatggtgcgtactggggcgttaaatctctcgacgagttacctatgctaactcagccgtca
aaagcgaatgaaaaggttagctggcagttacttcgctcgcttgaaatggttgatgataaa
cgggtgattaccgctcatggtcgtgctgcttatgagctgggttgccagccacgtattgcg
catatgctgcttaaagcgcagcgtttatcaaggcaagagagtgataataatctagtgatg
cttgcagcaattttggctggcactttagaggctagaggtcgcagtcgtaaaggcagtgat
atcagccattattttcaagaagctttaacgtctgaggctggcaaacagatccgtcagtgg
cttaatagcttaggtgttcgcaatggttcgtcgcacactctttcaatggtcgcaaggcag
gctgctagtgatgatattgccatgctgctggcttttgcttatcccgatcgcattgccaag
cagcgcggcgcaagcggctatcagttagcaggtggtacgggcgtcgagttagcgaacgat
gatagcttgtcagggcaaccttggttagtggttgctgactttcaagagagtgaaggccgc
agcaatggcaaagtctatctagctgccacactcaatgaacaattatttactgatcaattg
tcgagcttagtggatactattgagtactgtggatgggataacattaaaggacgatttttc
gccgagctacgacgtaacgtcggtcagatatccctcagtaaaaccccagttaaacagtta
gataaaaagcttattaaaaatgcgattgtagagcaggtcgtactcaatggcttagcatta
ctgaaatttgatgaacgtacagagcagttgcgctatcgagtggcgattgccagcgaccta
gataaatcgcatgattggccaagcttagatgacgaaagcttaattgcattattggatgat
tggctaaagccctatcttgatgatgtgcgcagtttggcacaattacagcaattagattgt
tatactttgctgcttaatttaatgccttgggctacccaacagcacttagaccgaatattg
ccaattaaatggctcatggccaccggtacacatgccaagattgagtatgacgctcagaag
cgtggacggttaagtgtaaggttgcaagaggcctttggtatgcagcagagccctcagtta
gttaatggtaagttagtgcttactatggagctgctgtcgccagctaggcgacctttggca
ttaacggctgatttagcgagtttttggcaaggtccatatgaccacgtaaagaaagagatg
aagggccgatacccaaagcatctatggcctgatgacccggcaaatacacagcccaccaaa
tttactaaaaagaagacctttagctcacaatag
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