KEGG   Streptomyces xiamenensis: SXIM_51150Help
Entry
SXIM_51150        CDS       T03904                                 

Definition
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
sxi  Streptomyces xiamenensis
Pathway
sxi03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:sxi00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    SXIM_51150
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:sxi03400]
    SXIM_51150
Enzymes [BR:sxi01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     SXIM_51150
DNA repair and recombination proteins [BR:sxi03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     SXIM_51150
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_C RNA_ligase
Motif
Other DBs
NCBI-ProteinID: AKG46499
UniProt: A0A0F7G030
LinkDB All DBs
Position
complement(5507897..5508850)
Genome map
AA seq 317 aa AA seqDB search
MPEEDVPLWVPPMLAVEGEPPTGAWGYEYKWDGYRCCLRIGAGGSVRATSRAGNDFTGRY
PELAEIEAGPVVLDGEIVALDAAGRPDFGLLQRRAQPPYTPVVFFAFDVLWHEGRGLLEE
PYERRRAVLASLAPPPESRLAVPPFYAGPRARPDELLEVARANGLEGLVAKRLDSRYRPG
RRSPLWVKKPLVRTQEVVIGGWQPGAGQRGGSIGSLLVGAYDEGGGLRYLGRVGSGFTRG
MLAELLALLGPLARADPPFADPVPREHGRRAHWVDPALVGEAAYRAWTRDGRLRQPSWRG
LRPDKTPGEVVRPGGAA
NT seq 954 nt NT seq  +upstreamnt  +downstreamnt
atgcccgaggaggacgtaccactgtgggtgccgccgatgctggcggtggagggcgagccg
cccaccggggcctgggggtacgagtacaagtgggacggctaccggtgctgtctgcggatc
ggagccggcgggtcggtgcgcgccaccagccgggcgggcaacgacttcaccgggcgctac
ccggagctggcggagatcgaggccgggccggtcgtgctggacggggagatcgtggcgctg
gacgcggcgggccggcccgacttcggactgctgcagcggcgcgcgcagccgccgtacacg
ccggtggtgttcttcgccttcgacgtactgtggcacgaggggcgcgggctgctggaggag
ccgtacgagcggcggcgggccgtcctcgcctcgctggccccgccgccggagtcacggctg
gcggtgccgccgttctacgccgggccccgggcgcggcccgacgagctgctggaggtggca
cgggcgaacggcctggaagggctggtcgccaagcggctcgactcccgctaccggcccggg
cggcggtcgccgctgtgggtgaagaagccgctggtgcggacccaggaggtggtgatcggc
ggctggcagccgggggcggggcagcgcggcgggtcgatcggttcgctgctggtgggcgcg
tacgacgaggggggcgggctgcgctatctgggccgggtgggttcggggttcacccggggg
atgctggccgaactgctggcgttgctggggccgctggcccgggcggatccgccgttcgcc
gacccggtgccgcgcgagcacgggcgccgggcccactgggtggacccggcgctggtgggt
gaggccgcctaccgggcctggacccgcgacggccggctgcggcagccgtcctggcgcggg
ctgcgtccggacaagacccccggggaggtggtccggcccgggggggccgcctga

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