Sphingobium sp. YBL2: TZ53_15965
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Entry
TZ53_15965 CDS
T03855
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
syb
Sphingobium sp. YBL2
Pathway
syb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
syb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TZ53_15965
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
syb03019
]
TZ53_15965
03016 Transfer RNA biogenesis [BR:
syb03016
]
TZ53_15965
Enzymes [BR:
syb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
TZ53_15965
Messenger RNA biogenesis [BR:
syb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
TZ53_15965
Transfer RNA biogenesis [BR:
syb03016
]
Prokaryotic type
tRNA degradation factors
TZ53_15965
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
BioW
S1_2
Motif
Other DBs
NCBI-ProteinID:
AJR24999
UniProt:
A0A0C5X763
LinkDB
All DBs
Position
3443056..3445383
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AA seq
775 aa
AA seq
DB search
MFDVKKVSIELGGKTLTLETGRIARQADAAVLATYGETVVLCAVTAAKSVKEGQDFFPLT
VHYQEKYSAAGRIPGGFFKRERGATEKETLVSRLIDRPVRPLFPEGFYNEINVIAQVLSF
DGESEPDIVAMIAASAALTLSGVPFLGPIGAARVGYKDGEYQLNPSLDEVKTGELDLVVA
ATGNAVMMVESEAKELSEDVMLGAVLFAHEASKKVVNAIIDLAEKAAKDPWDVAKGEDLD
DLKKKLKKLIGKDITAAYKLTDKSARSNALNEARAKAKAYFTEEGLDAQTVMAGIKLTKK
LEAEIVRGAILKDGKRIDGRTTTQIRPIEAMVGFLPRTHGSALFTRGETQSICTTTLGTK
DAEQMIDGLTGVHYESFMLHYNFPPYSVGEVGRFGAPGRREVGHGKLAWRALHPVLPSKE
EFPYTIRVLSDITESNGSSSMATVCGGSLSMMDAGVPLKRPVSGIAMGLILEGSKFAVLS
DILGDEDHLGDMDFKVAGTEAGITTMQMDIKVAGITQEIFEVALRQAKEGRAHILGEMSK
ALSSTRTELSAHAPRIETIQIDKAKIRDVIGTGGKVIREIVAETGAKVDIDDEGIIKISS
SDIAQIEAAKKWILGIVEEAEVGKIYTGKVVNIVDFGAFVNFMGGKDGLVHVSEMKNERV
EKPTDVVSEGQEVKVKVLEIDPRGKVRLSMRVVDQETGEELEDTRPPREPRGDRGGDREG
GRGDRNRRDRGGDRGDRGGRGGDRGPRRDRGPRGEGRGGDDDGSNAGLPDFLTQD
NT seq
2328 nt
NT seq
+upstream
nt +downstream
nt
atgttcgatgtaaagaaggtatcaatcgagctgggcggcaagaccctcacgctcgaaacc
ggccgcattgcgcgtcaggcagacgccgccgtgctggcgacctatggcgaaaccgtggtg
ctgtgcgccgtgaccgccgccaagtcggtgaaggaaggacaggacttcttcccgctgacc
gtccattatcaggaaaaatattcggccgccggtcgcattccgggcggcttcttcaagcgt
gaacgcggcgccacggaaaaggaaacgctggtttcccgcctgatcgaccgtccggtccgc
ccgctcttccccgaaggtttctacaatgaaatcaacgtcatcgctcaggttctgagcttc
gacggcgaaagcgagcccgacattgtggcgatgatcgccgcttcggctgcgctgaccctg
tcgggcgttcccttcctgggcccgatcggcgccgcccgcgtcggctacaaggatggcgaa
tatcagctgaacccgtcgctggacgaagtgaagaccggcgaactcgacctggtcgtcgcc
gccaccggcaatgcggtgatgatggtcgaatcggaagccaaggaactgtcggaagacgtc
atgctcggcgccgtcctcttcgcgcatgaagcgtcgaagaaggtcgtcaacgccatcatc
gacctcgccgaaaaggccgcgaaggacccgtgggacgtcgccaagggcgaagacctggat
gacctcaagaagaagctcaagaagctgatcggcaaggacatcacggccgcctacaagctg
accgacaagtcggcccgctccaacgcgctcaatgaagcccgcgccaaggcgaaggcttat
ttcacggaggaaggcctcgacgcccagaccgtcatggccggcatcaagctgaccaagaag
ctggaagccgaaatcgtccgcggcgccatcctgaaggacggcaagcgcatcgacggccgc
accaccacgcagatccgcccgatcgaggcgatggtgggcttcctgccgcgcacccatggt
tcggcgctgttcacccgtggcgaaacgcagtccatctgcaccacgacgctgggcaccaag
gacgcggagcagatgatcgacggcctgaccggcgttcattatgaaagcttcatgctgcac
tataacttcccgccctattcggtcggtgaagtcggccgcttcggcgcgccgggccgtcgc
gaagtcggccatggcaagctggcatggcgggccctgcacccggtgctgccgagcaaggaa
gaattcccctacaccatccgcgtgctgagcgacatcaccgagtccaacggctcgtcctcg
atggcgacggtctgcggcggttcgctgtccatgatggacgcgggcgttccgctgaagcgt
ccggtgtcgggcatcgccatgggcctgatcctggaaggctccaaattcgctgtcctcagc
gacattctgggcgacgaggatcaccttggcgacatggacttcaaggtggcgggcacggaa
gcgggcatcaccaccatgcagatggacatcaaggtcgccggcatcacgcaggaaatcttc
gaggtcgcgctgcgtcaggcgaaggaaggccgcgcccatatcctgggtgaaatgagcaag
gccctgtcctcgacccgcaccgaactgtcggcccatgccccgcgcatcgaaacgatccag
atcgacaaggcgaagatccgcgacgtcatcggcaccggcggcaaggtcatccgcgagatc
gtcgcggaaaccggcgccaaggtcgacatcgacgacgagggcatcatcaagatcagctcg
tccgacatcgcccagatcgaagccgccaagaagtggattctcggcattgtcgaggaagcg
gaagtcggcaagatctacaccggcaaggtcgtcaacatcgtcgacttcggcgcgttcgtg
aacttcatgggcggcaaggacggcctcgtccacgtctccgaaatgaagaatgagcgcgtc
gaaaagccgaccgacgtcgtgtcggaagggcaggaagtgaaggtcaaggttctcgaaatc
gacccgcgcggcaaggttcgcctgtccatgcgcgtcgtcgatcaggaaaccggagaggaa
ctggaagacacccgtccgccccgcgaacccaggggggatcggggcggcgaccgtgaaggc
ggccgtggcgaccgcaatcgccgtgatcgtggcggtgaccggggcgaccgtggcggccgc
ggcggcgatcgcggcccgcgccgcgaccgcggtccgcgcggcgaaggcaggggcggcgat
gacgacggctccaacgccggtctgcccgacttcctgacccaggactga
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