KEGG   Sphingobium sp. YBL2: TZ53_17365
Entry
TZ53_17365        CDS       T03855                                 
Name
(GenBank) DNA helicase II
  KO
K03657  ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
Organism
syb  Sphingobium sp. YBL2
Pathway
syb03420  Nucleotide excision repair
syb03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:syb00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    TZ53_17365
   03430 Mismatch repair
    TZ53_17365
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:syb03400]
    TZ53_17365
Enzymes [BR:syb01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     TZ53_17365
DNA repair and recombination proteins [BR:syb03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     TZ53_17365
   MMR (mismatch excision repair)
    Other MMR factors
     TZ53_17365
SSDB
Motif
Pfam: UvrD-helicase UvrD_C AAA_19 UvrD_C_2 Viral_helicase1 AAA_30 PcrA_UvrD_tudor AAA_12 AAA_11
Other DBs
NCBI-ProteinID: AJR25234
UniProt: A0A0C5X7S1
LinkDB
Position
complement(3766756..3769032)
AA seq 758 aa
MTLPAPSPDDPPYLQGLNEPQREAVLTTEGPVLVLAGAGTGKTAALTARLAHLIATRRAY
PSEILAVTFTNKAAREMRERVGRMIGPAVEGMPWLGTFHAIAAKMLRRHAELVGLQSNFT
ILDTDDQLRLMKQLIQAEGIDEKRWPARQLAGLIDQWKNKGLTPEEIGAGESEGYANGKG
QKLYAAYQARLRDVNACDFGDLLLHVLTILKRHRDVLESYQQRFRYIMVDEYQDTNSSQY
LWLRLLAQQRKNICCVGDDDQSIYSWRGAEVANILRFEKDFPGAKIVRLEQNYRSTPHIL
GAASGVIAENGNRLGKTLWTDIDVGEKVRIIGVWDGPEEARRVGDEIESIERSGQSLEGV
AILVRAQHQTREFEDRFIQIGLPYRIVGGFRFYERAEIRDALAYLRLVNQPADDLAFERI
VNVPKRGLGDKAVEKLHRLARAEGVPLALAAARILDTDEMTPQARRSLGAFIGDLARWRD
RAVQLPHAELARQILDESGYTAMLQAERTAESAGRLENLNELTRAMEEYETLGAFLEHVS
LVMDNEAQQDERKVTIMTIHAAKGLEFDTVFLAGWEEGIFPSQRALDEGGLNSLEEERRL
AYVAITRARKSCVILHAANRRIYGQWTSSIPSRFVGELPPEHVEEESSMSGGASLWRANW
SERADPFANVQRGTGRGPGWQRAQQSGQFTREPARIVEARASAVSLGNKGRDDMSVGLRV
FHQKFGYGTVAEIEGNKLEIDFETAGRKRVMDSFVQPA
NT seq 2277 nt   +upstreamnt  +downstreamnt
atgactctgcccgctccctcccccgacgatcccccctatctccaggggctgaacgaaccc
cagcgggaggccgtgctcacgaccgaggggccggtgctggtgcttgcaggcgccggcacg
ggcaagacggcagcgctcaccgctcgcctcgcccatctgatcgccacccgtcgggcctat
ccttcggaaatcctcgcagtcaccttcaccaacaaggcggcgcgcgaaatgcgggaacgc
gtcggtcggatgatcggccccgccgtcgaaggcatgccctggctgggcaccttccacgcc
atcgccgcgaagatgctgcgccgccatgccgaactggtggggctgcaatccaatttcacc
atcctcgacacggacgatcagcttcgcctgatgaagcagctcatccaggcggagggaatc
gacgagaagcgctggcccgcacgccagctcgccggcctcatcgaccagtggaagaacaag
gggctgacgccggaggaaatcggcgccggcgagagcgagggctatgccaacggaaagggg
cagaagctctacgccgcctatcaggcgcgtcttcgggacgtgaatgcctgcgatttcggg
gacttgctgctgcatgttctgacgattctgaaacgccatcgggacgtgctggaaagctat
cagcagcgcttccgctatatcatggtggacgaatatcaggacaccaacagcagccagtat
ctgtggctgcgcctgctcgcccagcagcgcaagaacatctgctgtgtgggagacgacgac
cagtctatctattcatggcggggggcggaagtcgccaatatcctgcggttcgaaaaggat
tttcccggcgcgaagatcgtccggctggaacagaattatcgctcgacaccccatatattg
ggcgctgcgtcaggagtgatcgcggaaaatggcaatcgcctgggcaagacgctctggacc
gacatcgacgtgggcgagaaggtccgcatcatcggcgtctgggacgggccggaggaagcg
cggcgcgtgggcgacgagatcgaatcgatcgaacgcagcggccaatcgctggagggggtc
gccatcctcgtccgggcccagcaccagacgcgcgagttcgaagaccgcttcatccagatc
ggcctgccctatcgcatcgtgggcggcttccgcttctatgaacgcgccgagatccgggac
gcgctcgcctatcttcgcctggtcaatcagcccgccgatgacctggcgttcgaacggatc
gtcaacgtccccaagcgcggcctgggcgacaaggccgtggaaaagctgcatcggcttgcc
cgggcggagggcgttccgcttgccctcgccgccgcgcgaatcctcgacacggacgagatg
acgccgcaggcccgccgcagccttggcgccttcatcggcgatctcgcccgctggcgggac
cgcgcggtgcaacttccccatgccgaactggcccgacagatattggacgaaagcggctac
accgccatgctccaggccgaacgcaccgccgaaagcgcgggaaggctggagaacctcaac
gaactgacccgcgccatggaggaatatgagacgctgggcgcattcctggagcatgtaagc
ctcgtcatggacaatgaggcgcaacaggacgagcgcaaggtcacgatcatgaccatccac
gccgccaaggggctggagttcgacacggtcttcctcgcggggtgggaagaaggcatcttc
ccctcccagcgcgcgctcgacgaaggcggcctcaacagcctggaggaggaacgccgcctc
gcctatgtcgcgatcacgcgggcgaggaagtcctgcgtcatcctgcacgccgccaaccgc
cgcatctatggccagtggaccagctccatcccttcgcgcttcgtcggggaattgcctccc
gaacatgtggaggaggaaagcagcatgtccggcggcgcctcgctctggcgcgccaactgg
tcggagcgggccgatcccttcgccaatgtccagcgcggcaccggtcgcggccccgggtgg
cagcgcgcccaacagagcggacagttcacccgcgaacccgcaaggatcgtggaggcgcgc
gcatcagcggtctcgctcggcaacaaggggcgggatgacatgagcgtcggcctgcgcgtc
ttccaccagaaattcggctacggcacggtggcggagatcgaaggcaacaagctggagatc
gatttcgaaacggcgggtcggaagcgggtgatggacagcttcgtccagcctgcctag

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