Sphingobium sp. YBL2: TZ53_17365
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Entry
TZ53_17365 CDS
T03855
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
syb
Sphingobium sp. YBL2
Pathway
syb03420
Nucleotide excision repair
syb03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
syb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
TZ53_17365
03430 Mismatch repair
TZ53_17365
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
syb03400
]
TZ53_17365
Enzymes [BR:
syb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
TZ53_17365
DNA repair and recombination proteins [BR:
syb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
TZ53_17365
MMR (mismatch excision repair)
Other MMR factors
TZ53_17365
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
Viral_helicase1
AAA_30
PcrA_UvrD_tudor
AAA_12
AAA_11
Motif
Other DBs
NCBI-ProteinID:
AJR25234
UniProt:
A0A0C5X7S1
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All DBs
Position
complement(3766756..3769032)
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AA seq
758 aa
AA seq
DB search
MTLPAPSPDDPPYLQGLNEPQREAVLTTEGPVLVLAGAGTGKTAALTARLAHLIATRRAY
PSEILAVTFTNKAAREMRERVGRMIGPAVEGMPWLGTFHAIAAKMLRRHAELVGLQSNFT
ILDTDDQLRLMKQLIQAEGIDEKRWPARQLAGLIDQWKNKGLTPEEIGAGESEGYANGKG
QKLYAAYQARLRDVNACDFGDLLLHVLTILKRHRDVLESYQQRFRYIMVDEYQDTNSSQY
LWLRLLAQQRKNICCVGDDDQSIYSWRGAEVANILRFEKDFPGAKIVRLEQNYRSTPHIL
GAASGVIAENGNRLGKTLWTDIDVGEKVRIIGVWDGPEEARRVGDEIESIERSGQSLEGV
AILVRAQHQTREFEDRFIQIGLPYRIVGGFRFYERAEIRDALAYLRLVNQPADDLAFERI
VNVPKRGLGDKAVEKLHRLARAEGVPLALAAARILDTDEMTPQARRSLGAFIGDLARWRD
RAVQLPHAELARQILDESGYTAMLQAERTAESAGRLENLNELTRAMEEYETLGAFLEHVS
LVMDNEAQQDERKVTIMTIHAAKGLEFDTVFLAGWEEGIFPSQRALDEGGLNSLEEERRL
AYVAITRARKSCVILHAANRRIYGQWTSSIPSRFVGELPPEHVEEESSMSGGASLWRANW
SERADPFANVQRGTGRGPGWQRAQQSGQFTREPARIVEARASAVSLGNKGRDDMSVGLRV
FHQKFGYGTVAEIEGNKLEIDFETAGRKRVMDSFVQPA
NT seq
2277 nt
NT seq
+upstream
nt +downstream
nt
atgactctgcccgctccctcccccgacgatcccccctatctccaggggctgaacgaaccc
cagcgggaggccgtgctcacgaccgaggggccggtgctggtgcttgcaggcgccggcacg
ggcaagacggcagcgctcaccgctcgcctcgcccatctgatcgccacccgtcgggcctat
ccttcggaaatcctcgcagtcaccttcaccaacaaggcggcgcgcgaaatgcgggaacgc
gtcggtcggatgatcggccccgccgtcgaaggcatgccctggctgggcaccttccacgcc
atcgccgcgaagatgctgcgccgccatgccgaactggtggggctgcaatccaatttcacc
atcctcgacacggacgatcagcttcgcctgatgaagcagctcatccaggcggagggaatc
gacgagaagcgctggcccgcacgccagctcgccggcctcatcgaccagtggaagaacaag
gggctgacgccggaggaaatcggcgccggcgagagcgagggctatgccaacggaaagggg
cagaagctctacgccgcctatcaggcgcgtcttcgggacgtgaatgcctgcgatttcggg
gacttgctgctgcatgttctgacgattctgaaacgccatcgggacgtgctggaaagctat
cagcagcgcttccgctatatcatggtggacgaatatcaggacaccaacagcagccagtat
ctgtggctgcgcctgctcgcccagcagcgcaagaacatctgctgtgtgggagacgacgac
cagtctatctattcatggcggggggcggaagtcgccaatatcctgcggttcgaaaaggat
tttcccggcgcgaagatcgtccggctggaacagaattatcgctcgacaccccatatattg
ggcgctgcgtcaggagtgatcgcggaaaatggcaatcgcctgggcaagacgctctggacc
gacatcgacgtgggcgagaaggtccgcatcatcggcgtctgggacgggccggaggaagcg
cggcgcgtgggcgacgagatcgaatcgatcgaacgcagcggccaatcgctggagggggtc
gccatcctcgtccgggcccagcaccagacgcgcgagttcgaagaccgcttcatccagatc
ggcctgccctatcgcatcgtgggcggcttccgcttctatgaacgcgccgagatccgggac
gcgctcgcctatcttcgcctggtcaatcagcccgccgatgacctggcgttcgaacggatc
gtcaacgtccccaagcgcggcctgggcgacaaggccgtggaaaagctgcatcggcttgcc
cgggcggagggcgttccgcttgccctcgccgccgcgcgaatcctcgacacggacgagatg
acgccgcaggcccgccgcagccttggcgccttcatcggcgatctcgcccgctggcgggac
cgcgcggtgcaacttccccatgccgaactggcccgacagatattggacgaaagcggctac
accgccatgctccaggccgaacgcaccgccgaaagcgcgggaaggctggagaacctcaac
gaactgacccgcgccatggaggaatatgagacgctgggcgcattcctggagcatgtaagc
ctcgtcatggacaatgaggcgcaacaggacgagcgcaaggtcacgatcatgaccatccac
gccgccaaggggctggagttcgacacggtcttcctcgcggggtgggaagaaggcatcttc
ccctcccagcgcgcgctcgacgaaggcggcctcaacagcctggaggaggaacgccgcctc
gcctatgtcgcgatcacgcgggcgaggaagtcctgcgtcatcctgcacgccgccaaccgc
cgcatctatggccagtggaccagctccatcccttcgcgcttcgtcggggaattgcctccc
gaacatgtggaggaggaaagcagcatgtccggcggcgcctcgctctggcgcgccaactgg
tcggagcgggccgatcccttcgccaatgtccagcgcggcaccggtcgcggccccgggtgg
cagcgcgcccaacagagcggacagttcacccgcgaacccgcaaggatcgtggaggcgcgc
gcatcagcggtctcgctcggcaacaaggggcgggatgacatgagcgtcggcctgcgcgtc
ttccaccagaaattcggctacggcacggtggcggagatcgaaggcaacaagctggagatc
gatttcgaaacggcgggtcggaagcgggtgatggacagcttcgtccagcctgcctag
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