Synechococcus elongatus PCC6301: syc0015_c
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Entry
syc0015_c CDS
T00163
Symbol
rpoD6
Name
(GenBank) group2 RNA polymerase sigma factor RpoD6
KO
K03086
RNA polymerase primary sigma factor
Organism
syc
Synechococcus elongatus PCC6301
Brite
KEGG Orthology (KO) [BR:
syc00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
syc0015_c (rpoD6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
syc03021
]
syc0015_c (rpoD6)
Transcription machinery [BR:
syc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
syc0015_c (rpoD6)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4
Sigma70_r3
Sigma70_r1_2
Sigma70_r4_2
HNH_repeat
Motif
Other DBs
NCBI-ProteinID:
BAD78205
CyanoBase:
syc0015_c
UniProt:
A0A0H3K505
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All DBs
Position
complement(14434..15384)
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AA seq
316 aa
AA seq
DB search
MLSGVRMASASAHAVATAQRRTRDNVSWYLSSIGRIPLLTADQEIELGQKVQVMMNLLEE
TSSDRTFTEAETAAIQLGQRAKERMIKANLRLVVSVAKKYQGKGLEFLDLIQEGALGLER
AVEKFDPSKGYKFSTYAFWWIRQSMTRAIACQSRTIRLPVHLTERLSQIRKVTRELAHEL
GRLPSRQEIAEAVQLPLNDLETILRQSRQCTSLDAPVSGEDGKSFLGELIADPNGNEPMD
IMENAMQREQLDAWLEHLTPQERQVLYLRFGLGDGERHTLAEIGRMMEVSRERVRQVEVK
ALRKLRNLTKRSRIAV
NT seq
951 nt
NT seq
+upstream
nt +downstream
nt
atgctttcgggggtgcgtatggcgagtgcttcggctcatgctgtcgcgacggctcagcga
cgaacaagagataacgtcagttggtatctcagctccatcggtcggattccattgctcacc
gccgatcaggagatcgagctggggcagaaagtgcaggtgatgatgaacctgctggaagaa
acttctagcgatcgcacgtttactgaggccgaaaccgcagcgatccagctggggcagcgt
gctaaggaacggatgatcaaggccaacttgcgtcttgtggtctctgtggccaaaaagtac
caaggtaagggtcttgagtttcttgacctgatccaagaaggcgctctcgggctagaacgt
gctgtcgagaaatttgacccctccaagggctacaagttttccacctatgccttttggtgg
attcgccagagcatgacaagggcgatcgcctgccaatcgcgcactattcgcctgccggtt
cacttgactgaacggctgagccaaatccgcaaagtgactcgggaactggcgcacgagcta
ggccgtttgccctctcgccaagaaattgcagaagcggttcagttgccactgaatgacctc
gaaacaattctgcgtcagtcgcgccaatgcaccagcctagatgctccagtcagtggtgaa
gatggcaagagtttcctgggtgagctgattgctgatcccaacggcaatgagcccatggac
atcatggaaaatgccatgcagcgcgagcagcttgatgcttggctcgagcatctcacgccc
caagagcgccaggtgctctatctccgctttggactgggtgatggcgaacgtcataccctc
gctgaaatcggccggatgatggaagtctcgcgcgagcgggtccgccaagttgaggtcaaa
gcgctgcgtaagctccgcaacctgacgaagcgatcgcggattgctgtctag
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