Synechocystis sp. PCC 6803: slr1129
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Entry
slr1129 CDS
T00004
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
syn
Synechocystis sp. PCC 6803
Pathway
syn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
syn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
slr1129 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
syn03019
]
slr1129 (rne)
03009 Ribosome biogenesis [BR:
syn03009
]
slr1129 (rne)
Enzymes [BR:
syn01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
slr1129 (rne)
Messenger RNA biogenesis [BR:
syn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
slr1129 (rne)
Ribosome biogenesis [BR:
syn03009
]
Prokaryotic type
rRNA processing factors
slr1129 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
Motif
Other DBs
NCBI-ProteinID:
BAA16658
CyanoBase:
slr1129
UniProt:
P72656
LinkDB
All DBs
Position
93128..95152
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AA seq
674 aa
AA seq
DB search
MPKQIVIAEKHQVAAVFWKDQIQELVVSTGSQQVGDIYLGLVDNILPSIDAAFINIGDTE
KNGFIHVSDLGPVRLRRTAGSISELLSPQQRVLVQVMKEPTGNKGPRLTGNISMPGRYMV
LMPYGRGVNLSRRINREEERSRLRALAVLIKPPGMGLLVRTEAEDVPEDAIIEDLENLQK
QWELVQQQAMTRSAPMLLDRDDDFIKRVLRDMYSSEVNRIVVDTPAGMKRIKQQLMNWDQ
GRLPEGVLIDCHRESLSILEYFRVNATIREALKPRVDLPSGGYIIIEPTEALTVIDVNSG
SFTHSANSRETVLWTNYEAATEIARQLKLRNIGGVIIIDFIDMDSHKDQLQLLEHFNRCL
ETDKARPQIAQLTELGLVELTRKRQGQNLYELFGQPCPECGGLGHLVELPGEKGFVSLSP
TAVNSSIPPRLVEKPILSPPVAKVNDLPKKEEAKISSPLDLLFHPNYQEQGDRDSNRRRR
RRRGSEFSEKENIKSVGISRSKGPSPSPTKEKVTGTAPPRRERPSRRVEKTLVPVDVAMT
TLEQDIYARMGISPLIKTEYADQDPRSFMVSVVTAGAALEGNTNGSGSLVNAVITTVDNG
DNGDNVPSDGLTIVSEVTAPTPVIEQPREETVEPEQVVLPQLDDETPAAPVAEESAPIET
KKRPGRRRRRSSAE
NT seq
2025 nt
NT seq
+upstream
nt +downstream
nt
atgccaaaacaaattgtcattgctgaaaaacatcaggttgctgctgttttttggaaggat
caaattcaagaattggtggtgtccacgggcagccaacaggtgggagatatttatttaggc
ttagttgacaatattctgcccagcattgacgccgcttttattaacattggggacaccgaa
aaaaatggctttatccacgtcagtgacctcggcccagttagattaaggcgcaccgccggt
tccatttctgaacttttatctcctcaacaaagagtgttggtgcaggtgatgaaggaaccc
accggcaataagggcccccgcctaactggaaatatcagtatgccggggcgttatatggtg
ttgatgccctatggccggggagtgaatctttcccgtcggattaaccgggaggaggaacgc
agtcgtttgagggctttggctgtgttaatcaagccaccgggcatgggactgctagtgcgg
actgaagcggaagatgtgccggaagatgcgattatcgaagatttggaaaatctgcaaaaa
caatgggaattggtgcaacaacaggccatgacccgtagtgcccccatgcttctggaccgg
gatgatgatttcatcaagcgagtgctgcgggatatgtactccagcgaagtgaatcgcatt
gtggtggataccccggcggggatgaaacggattaaacaacagttgatgaactgggatcaa
ggtcgtttgccggagggagttttaattgattgtcaccgggaatccctcagtattctggag
tatttccgggtcaatgccactatccgggaagcccttaaacccagggtggatctgccttcg
gggggttatataatcattgagccgacggaagctttgacggtaattgacgttaactctggt
tcctttacccattcggccaattcccgggaaacggtgctctggactaactatgaagcggcg
acggaaattgcgcgtcagttgaaactgagaaatattggcggggtgatcattatcgatttc
attgatatggattcccataaggaccagttgcaacttttggagcattttaaccgctgcttg
gaaacggataaggccaggccccagatcgcccagttgacggagttgggactagtggagttg
acccgtaagcgccagggacaaaatttgtatgaactatttggacagccttgtcctgagtgt
ggtggtttaggacatttggtggaactccctggcgagaagggttttgtttccctgtccccc
acagcggtcaacagtagcattcccccccggttggtggaaaaaccgattctctctcccccc
gttgccaaggtcaatgacctgcccaagaaggaagaagcaaaaatatctagccccctggac
ttacttttccatcctaattatcaagagcagggcgatcgggatagtaaccgtcgtcgtcgt
cgccgtcgaggctcggagttttctgaaaaggaaaatattaaatctgtgggaatttcccgt
agtaagggtcccagccccagccccactaaggagaaagtgacgggcactgctcctccccgc
cgtgaacggccttcccgtcgagtggaaaaaaccttggttccggtcgatgtcgccatgaca
acgttggagcaggatatttatgctcgtatgggaatttctcccctaatcaaaacggagtac
gctgatcaagacccccgctcctttatggtttcggtggttacggcgggagcggccttggag
ggaaacactaacggtagtggcagtctggttaatgctgttattacaacggtggacaatgga
gacaacggggataacgtccccagtgatgggttgacaattgtatctgaggtcacagcccca
accccggttattgagcaaccaagggaggaaacggttgagccggaacaggttgtcttaccc
caacttgatgatgaaactccagccgctccggtggcagaggagtctgctcccatagaaaca
aaaaaacgtcctggcagaagacggcggcgttcttcagcggagtag
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