KEGG   Synechocystis sp. PCC 6803: slr1129
Entry
slr1129           CDS       T00004                                 
Symbol
rne
Name
(GenBank) ribonuclease E
  KO
K08300  ribonuclease E [EC:3.1.26.12]
Organism
syn  Synechocystis sp. PCC 6803
Pathway
syn03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:syn00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    slr1129 (rne)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:syn03019]
    slr1129 (rne)
   03009 Ribosome biogenesis [BR:syn03009]
    slr1129 (rne)
Enzymes [BR:syn01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.26  Endoribonucleases producing 5'-phosphomonoesters
    3.1.26.12  ribonuclease E
     slr1129 (rne)
Messenger RNA biogenesis [BR:syn03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     slr1129 (rne)
Ribosome biogenesis [BR:syn03009]
 Prokaryotic type
  rRNA processing factors
   slr1129 (rne)
SSDB
Motif
Pfam: RNase_E_G
Other DBs
NCBI-ProteinID: BAA16658
CyanoBase: slr1129
UniProt: P72656
LinkDB
Position
93128..95152
AA seq 674 aa
MPKQIVIAEKHQVAAVFWKDQIQELVVSTGSQQVGDIYLGLVDNILPSIDAAFINIGDTE
KNGFIHVSDLGPVRLRRTAGSISELLSPQQRVLVQVMKEPTGNKGPRLTGNISMPGRYMV
LMPYGRGVNLSRRINREEERSRLRALAVLIKPPGMGLLVRTEAEDVPEDAIIEDLENLQK
QWELVQQQAMTRSAPMLLDRDDDFIKRVLRDMYSSEVNRIVVDTPAGMKRIKQQLMNWDQ
GRLPEGVLIDCHRESLSILEYFRVNATIREALKPRVDLPSGGYIIIEPTEALTVIDVNSG
SFTHSANSRETVLWTNYEAATEIARQLKLRNIGGVIIIDFIDMDSHKDQLQLLEHFNRCL
ETDKARPQIAQLTELGLVELTRKRQGQNLYELFGQPCPECGGLGHLVELPGEKGFVSLSP
TAVNSSIPPRLVEKPILSPPVAKVNDLPKKEEAKISSPLDLLFHPNYQEQGDRDSNRRRR
RRRGSEFSEKENIKSVGISRSKGPSPSPTKEKVTGTAPPRRERPSRRVEKTLVPVDVAMT
TLEQDIYARMGISPLIKTEYADQDPRSFMVSVVTAGAALEGNTNGSGSLVNAVITTVDNG
DNGDNVPSDGLTIVSEVTAPTPVIEQPREETVEPEQVVLPQLDDETPAAPVAEESAPIET
KKRPGRRRRRSSAE
NT seq 2025 nt   +upstreamnt  +downstreamnt
atgccaaaacaaattgtcattgctgaaaaacatcaggttgctgctgttttttggaaggat
caaattcaagaattggtggtgtccacgggcagccaacaggtgggagatatttatttaggc
ttagttgacaatattctgcccagcattgacgccgcttttattaacattggggacaccgaa
aaaaatggctttatccacgtcagtgacctcggcccagttagattaaggcgcaccgccggt
tccatttctgaacttttatctcctcaacaaagagtgttggtgcaggtgatgaaggaaccc
accggcaataagggcccccgcctaactggaaatatcagtatgccggggcgttatatggtg
ttgatgccctatggccggggagtgaatctttcccgtcggattaaccgggaggaggaacgc
agtcgtttgagggctttggctgtgttaatcaagccaccgggcatgggactgctagtgcgg
actgaagcggaagatgtgccggaagatgcgattatcgaagatttggaaaatctgcaaaaa
caatgggaattggtgcaacaacaggccatgacccgtagtgcccccatgcttctggaccgg
gatgatgatttcatcaagcgagtgctgcgggatatgtactccagcgaagtgaatcgcatt
gtggtggataccccggcggggatgaaacggattaaacaacagttgatgaactgggatcaa
ggtcgtttgccggagggagttttaattgattgtcaccgggaatccctcagtattctggag
tatttccgggtcaatgccactatccgggaagcccttaaacccagggtggatctgccttcg
gggggttatataatcattgagccgacggaagctttgacggtaattgacgttaactctggt
tcctttacccattcggccaattcccgggaaacggtgctctggactaactatgaagcggcg
acggaaattgcgcgtcagttgaaactgagaaatattggcggggtgatcattatcgatttc
attgatatggattcccataaggaccagttgcaacttttggagcattttaaccgctgcttg
gaaacggataaggccaggccccagatcgcccagttgacggagttgggactagtggagttg
acccgtaagcgccagggacaaaatttgtatgaactatttggacagccttgtcctgagtgt
ggtggtttaggacatttggtggaactccctggcgagaagggttttgtttccctgtccccc
acagcggtcaacagtagcattcccccccggttggtggaaaaaccgattctctctcccccc
gttgccaaggtcaatgacctgcccaagaaggaagaagcaaaaatatctagccccctggac
ttacttttccatcctaattatcaagagcagggcgatcgggatagtaaccgtcgtcgtcgt
cgccgtcgaggctcggagttttctgaaaaggaaaatattaaatctgtgggaatttcccgt
agtaagggtcccagccccagccccactaaggagaaagtgacgggcactgctcctccccgc
cgtgaacggccttcccgtcgagtggaaaaaaccttggttccggtcgatgtcgccatgaca
acgttggagcaggatatttatgctcgtatgggaatttctcccctaatcaaaacggagtac
gctgatcaagacccccgctcctttatggtttcggtggttacggcgggagcggccttggag
ggaaacactaacggtagtggcagtctggttaatgctgttattacaacggtggacaatgga
gacaacggggataacgtccccagtgatgggttgacaattgtatctgaggtcacagcccca
accccggttattgagcaaccaagggaggaaacggttgagccggaacaggttgtcttaccc
caacttgatgatgaaactccagccgctccggtggcagaggagtctgctcccatagaaaca
aaaaaacgtcctggcagaagacggcggcgttcttcagcggagtag

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