Synechococcus sp. KORDI-52: KR52_09925
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Entry
KR52_09925 CDS
T03346
Name
(GenBank) organic colvent ABC transporter permease
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
synd
Synechococcus sp. KORDI-52
Pathway
synd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
synd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KR52_09925
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
synd03019
]
KR52_09925
03016 Transfer RNA biogenesis [BR:
synd03016
]
KR52_09925
Enzymes [BR:
synd01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
KR52_09925
Messenger RNA biogenesis [BR:
synd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
KR52_09925
Transfer RNA biogenesis [BR:
synd03016
]
Prokaryotic type
tRNA degradation factors
KR52_09925
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
S1
CSD2
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
AII49457
UniProt:
A0A076HLD9
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All DBs
Position
1789753..1792074
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AA seq
773 aa
AA seq
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MKFSVADLLDQLSSEQPSQVDQLAKILKLSNKSDKASLDLAVSSLVKIGVVEQSNEGGLT
RPTKSALIDARLRCSSKGFCFAIPEDGGEDIYIRDHQLNHAWHGDRVLVRVTREGGRRRS
PEGGVQCILERATRSLLAQVEQQSEQLLAAPLDDRILAGIKLPPEDSQHLPGETAASVVE
VRIDRYPVAQHAAAGHVVRSLPLNGGPAADRDLLLTKAGLQDRAAAPRSSGKTPTTRGRV
DLTAQPSLLLKGWKQEDAPGLPAVHVEAKDGGCRLWVHVPSVGERIGLGSSLDACLRDRG
EALCLGEVWQPLLTPALNKATTFSPGTEADAVTVRLDIAANGELIDWEFMLSSVRPVADV
SADQLIALAERKPKARSIPTALKPIKDQLGQLETLRFCSTLLLEHERSSGAVQLDLCPPQ
LEALGDLRSADPSGLRHRWVDAFNPVDPHAFLQPLLRAADRAWTAHRIDLQLPGIITQTD
EPDSNLLTDVAKTAIALDLPLELDDEGCPSACELSQVFQASNQRRVLEQQLSHALPPIQL
VACPQMPSTAADSDAEEAVSSSANTSLTPWTCATQHYSHLVNQQLLVALLTDGKDRPTVR
QKNRLKLGLKGAGADLTWPLFTATQDEKLNGLVSDRIVHRLNSRRRQVLELEKDLLSMIQ
ARSAQPLIGQPVEGRISGVQSYGFFVEVGESRVEGLVHVSSLNDDWYEYRSRQNRLVGRK
NRQTYQLGDAVQVRVINVDVLRNQIDLDVIGQGSGESTEPESSEPLPVALSER
NT seq
2322 nt
NT seq
+upstream
nt +downstream
nt
atgaaattctcggttgccgatctgctggatcagctctcctctgagcaaccctcccaggtg
gatcaactggccaagatcctgaagctcagcaacaagtcggacaaagcctcgcttgatctc
gctgtttcatcactggtcaaaatcggtgtggtcgaacagtccaacgagggtggactcact
cgacccactaagagtgctctgattgacgcgcgactgagatgcagcagcaaaggcttctgc
ttcgccatacccgaggacggcggtgaggacatttacatccgcgaccatcagctcaaccat
gcctggcatggtgatcgcgttctcgtgcgagtaacccgagaaggcggtcgtcgccgttct
cccgaaggtggcgttcagtgcatccttgaacgggccacccggtcactcctggcacaggtt
gagcaacaaagcgagcagttgctggcagccccacttgacgacaggattctggccgggatc
aaactgcctcccgaggactcccaacatctgccgggcgaaacggcagcaagcgttgttgag
gtacgcattgaccgctatccggtggcccagcacgccgccgccggacatgtcgtgcgttca
ctgccactcaacggaggtcccgctgctgatcgggatctgctgctcaccaaggcgggactc
caggaccgtgcagcggccccccgtagttccggtaaaacgcccacgaccaggggtcgggtc
gatctgacggcacaaccaagcctgctgctcaagggttggaagcaagaggatgcacctggg
ttgcctgccgtgcatgttgaagccaaggatggcggttgtcgtctctgggtccatgtgccc
agcgtgggcgaacggatcggtttgggcagcagcctcgatgcctgcctgcgcgaccgcggt
gaagccctctgcctcggtgaagtctggcaacccctgctgacacctgccctcaacaaagcg
acaacgttttcacccggcacggaggcagatgccgtcactgttcgtttggacatcgcagcc
aatggtgagctcatcgactgggagttcatgctgagctcggttcgtcccgtcgctgatgtg
agcgccgatcagttgatcgcccttgcggaacgcaaaccaaaggcgcgcagcattccaacg
gcactaaaacccatcaaagaccagctcggccaactggaaaccctgcggttttgcagcacc
ctgctgctggagcacgagcgcagcagcggggctgtgcaactcgacctctgtcctccccag
ctggaggcacttggggacctccgcagcgcggatccctccggtctgcggcatcgctgggtt
gatgccttcaacccggtggaccctcatgcttttcttcaacctctgctgagggctgccgac
cgtgcatggacggcgcacagaatcgatcttcaactgcctgggatcatcacgcaaaccgat
gaacctgatagcaaccttctgaccgatgtggcgaagaccgccatcgccctggatctcccc
cttgaactggatgacgagggttgtccgtccgcctgcgaactcagccaggtttttcaagcc
agcaatcagcgtcgcgtgcttgaacaacagctcagccacgccctgcctccaatccaactg
gtggcatgcccacagatgccctctaccgcagctgattccgatgcggaggaggctgtttcg
agcagcgccaacacgtcactcacgccttggacctgtgccacccagcactattcacacctg
gtgaatcaacagctgctcgttgccctgctgacagatggcaaagaccgcccgacagtgcgt
cagaagaaccgtttgaagctgggtctcaagggagcgggcgctgatctgacctggcccctc
ttcacggcaacccaggacgaaaagctgaatggcctggtgagcgaccgcattgtgcatcga
ctcaacagccgtcgacgtcaggttttagaacttgagaaggatcttctttcgatgatccag
gcccgatcagctcagccgttgatcggccagccggttgaaggccgcatcagtggtgtgcag
agctacggcttcttcgttgaagttggcgaaagtcgtgttgaaggacttgttcacgtgagc
tccctcaacgatgactggtacgaatacagatcccgccagaatcgtttggtcggacggaag
aaccgtcagacctatcaacttggcgacgccgttcaggtgcgcgtcatcaatgttgatgtg
ctgcgcaaccagatcgaccttgatgtgattggccagggatctggtgaatccacagagcct
gaatcgtctgaaccactgcccgttgccctcagcgagcgctga
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