Tepidanaerobacter acetatoxydans Re1: TepiRe1_0196
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Entry
TepiRe1_0196 CDS
T02434
Symbol
rpoC
Name
(GenBank) RNA polymerase (beta' subunit) (part 1)
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
tae
Tepidanaerobacter acetatoxydans Re1
Pathway
tae03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
tae00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
TepiRe1_0196 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tae03021
]
TepiRe1_0196 (rpoC)
03400 DNA repair and recombination proteins [BR:
tae03400
]
TepiRe1_0196 (rpoC)
Enzymes [BR:
tae01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
TepiRe1_0196 (rpoC)
Transcription machinery [BR:
tae03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
TepiRe1_0196 (rpoC)
DNA repair and recombination proteins [BR:
tae03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
TepiRe1_0196 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
Motif
Other DBs
NCBI-ProteinID:
CDI40320
UniProt:
U4Q7U2
LinkDB
All DBs
Position
205528..207150
Genome browser
AA seq
540 aa
AA seq
DB search
MLELNYFDSIKIGLASPEQIREWSKGEVKKPETINYRTLKPEKQGLFCERIFGPVKDWEC
HCGKYKRVRYKGVICDRCGVEVTKSKVRRERIGHIELAAPVSHIWFLKGIPSRIGLILDM
SPRSLEKVIYFASYVVTDAGDTPLMKKQLLNEREYREYRDKYGDAFKAGMGAESVKELLT
EIDCEKLSKELRTELKDATGQKRIRILRRLEVVEAFRKSKNKPEWMILEVIPVIPPDLRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPDIIVRNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPELKLYQCGLPKE
MALELFKPFVMKKLVSEGHAHNIKSAKRMVERIRPEVWDVLEDIIKEHPVLLNRAPTLHR
LGIQAFEPILVEGRAIQIHPLVCTAYNADFDGDQMAVHLPLSAEAQAEARVLMLSINNIL
KPQDGKPVVTPTQDMVLGSYYLTIERPGEKGEGKYFSCLKKRYWLMKWEKWVFMHLLMLE
NT seq
1623 nt
NT seq
+upstream
nt +downstream
nt
ttgctggaactcaattattttgattccataaagattggtcttgcttcaccggagcagata
agagaatggtctaaaggagaggtaaaaaagcctgaaactattaattacagaactcttaaa
ccggagaagcagggattgttctgtgaacgtatatttggccctgtaaaggattgggagtgt
cattgcggtaaatataaaagggtaagatataaaggtgttatatgcgaccgctgtggagtt
gaagttacaaaatctaaagtgcgccgtgaaagaataggtcatattgagctggcagccccc
gtttcccatatatggtttttaaagggaataccaagtcgcattggcttgattctcgatatg
tcaccgcgatccttggaaaaggtaatatattttgcttcttatgtagtgactgatgctggc
gatactcccttgatgaaaaagcaattattaaatgaaagagaataccgagaatatcgggat
aaatacggcgatgcttttaaagccggaatgggagccgaatctgtcaaagaacttttgact
gaaatagattgcgagaaattatctaaagagcttaggacggaattaaaggatgctacaggc
caaaagaggataaggattctcaggcggctggaagttgtagaggctttcaggaaatcaaaa
aataaacctgagtggatgattttagaagttattccggtaattccgcctgaccttagacca
atggtgcagttagacggcggacgttttgcaacatcagatcttaatgacttgtatcgaagg
gttattaataggaataaccgtctaaaaagacttttagatttaggggcaccggacatcata
gtaagaaatgaaaagcgaatgctccaagaggcagtggatgcccttattgataacggccgg
cgaggccgcccggttacaggccctggcaacaggccactcaaatctttaagtgatatgcta
aaaggtaagcaaggacggtttcgacaaaacctgttaggtaagcgtgttgactattccggg
cgttcggttattgtggtcggtcctgaacttaaattatatcaatgcggtttaccaaaagaa
atggccttggagctattcaagccctttgtcatgaaaaaattggtatcagaagggcatgca
cataatataaaaagtgcaaaacgcatggtagagcggataaggcctgaagtttgggatgtg
ctcgaggatattatcaaagagcatccagtacttttaaacagggctcctacattgcaccgt
ttgggaattcaggcttttgagcctatactggtagaaggccgagccatacagatacatcct
ctggtttgtaccgcatacaatgcagattttgacggcgaccagatggccgtccacttaccg
ctttcagcggaagctcaggctgaagcaagggttttaatgctatcaataaataacatattg
aagcctcaggacggaaagccggtagttactccgactcaagatatggttttaggttcatac
tatttaacgatagaaagacccggcgaaaaaggcgaagggaaatatttttcttgcctgaag
aagcggtattggcttatgaaatgggagaagtgggtcttcatgcacctgttaatgttagaa
taa
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