KEGG   Thauera aromatica: Tharo_0091Help
Entry
Tharo_0091        CDS       T05381                                 

Definition
(GenBank) DNA ligase (ATP)
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
tak  Thauera aromatica
Pathway
tak03030  DNA replication
tak03410  Base excision repair
tak03420  Nucleotide excision repair
tak03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:tak00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    Tharo_0091
   03410 Base excision repair
    Tharo_0091
   03420 Nucleotide excision repair
    Tharo_0091
   03430 Mismatch repair
    Tharo_0091
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:tak03032]
    Tharo_0091
   03400 DNA repair and recombination proteins [BR:tak03400]
    Tharo_0091
Enzymes [BR:tak01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     Tharo_0091
    6.5.1.6  DNA ligase (ATP or NAD+)
     Tharo_0091
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     Tharo_0091
DNA replication proteins [BR:tak03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    Tharo_0091
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     Tharo_0091
DNA repair and recombination proteins [BR:tak03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     Tharo_0091
   NER (nucleotide excision repair)
    Other NER factors
     Tharo_0091
   MMR (mismatch exicision repair)
    Other MMR factors
     Tharo_0091
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_OB_2 DNA_ligase_A_M RNA_ligase
Motif
Other DBs
NCBI-ProteinID: AVR87043
UniProt: A0A2R4BII6
LinkDB All DBs
Position
complement(109278..110036)
Genome map
AA seq 252 aa AA seqDB search
MHAERYHDGIDPADYWVSEKLDGVRAHWDGGRLHLRSGQPISAPAWFVAALPAVTLDGEL
WLGRRSFDRLSGLIRRNAPDDPGWREVRYMVFDIPGAEGDFSTRVHQLRALAERAAVPWL
EAVPQTRVTDLRALQRRFEEVVRGGGEGLMLHRASARWTPGRSSALLKLTPWHDAEARVL
AHLPGKGRLQGLTGSLLVETPDGRRFRLGSGLSDALRRTPPPPGTLVTYRYRELTPAGLP
RFPRYLRVRDLP
NT seq 759 nt NT seq  +upstreamnt  +downstreamnt
atgcacgccgagcgttaccacgacggcatcgatccggccgactactgggtcagcgaaaag
ctcgacggcgtgcgcgcgcactgggacggcggccgcctgcacctgcgcagcggacagccg
atcagcgcccccgcctggttcgtcgccgcactgccggcggtgacgctggacggagagctg
tggctgggacggcgcagtttcgaccgcctctccggcctgatccggcgcaacgcgcccgac
gatccgggatggcgcgaggtgcgctacatggtgttcgatattcccggcgcggagggcgat
ttcagcacccgcgtgcaccagctgcgcgcactcgccgagcgcgctgccgtgccctggctg
gaggccgtgccgcagacccgggtcaccgacctgcgcgccctgcagcgccgcttcgaggaa
gtcgtgcgcggcggcggcgaaggcctgatgctgcaccgcgccagcgcgcgctggacaccg
ggacgcagcagcgcgctgctcaagctcaccccctggcacgacgccgaagcgcgcgtcctc
gcccacctgccgggcaaaggccggctgcaggggctgaccggctccctgctggtggaaacc
cccgacggccgccgcttccgcctcggcagcggactcagcgacgcgctgcggcgcactccg
ccgcctcccggcaccctggtcacctaccgctaccgcgaactcactcccgccggcctgccg
cgcttcccgcgctacctgcgcgtgcgcgacctgccctga

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