Thauera aromatica: Tharo_1593
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Entry
Tharo_1593 CDS
T05381
Name
(GenBank) Ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
tak
Thauera aromatica
Pathway
tak03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tak00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Tharo_1593
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tak03019
]
Tharo_1593
03009 Ribosome biogenesis [BR:
tak03009
]
Tharo_1593
Enzymes [BR:
tak01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
Tharo_1593
Messenger RNA biogenesis [BR:
tak03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Tharo_1593
Ribosome biogenesis [BR:
tak03009
]
Prokaryotic type
rRNA processing factors
Tharo_1593
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
TMEM106_N
Anti-TRAP
Motif
Other DBs
NCBI-ProteinID:
AVR88510
UniProt:
A0A2R4BMH9
LinkDB
All DBs
Position
complement(1702288..1705353)
Genome browser
AA seq
1021 aa
AA seq
DB search
MKRMLFNATQAEELRVAIVDGQKLIDLDIESAAKEERKSNIYKAVITRIEPSLEAAFVDY
GAERHGFLPFKEISRAYFQPGVDAGKASIKEALREGQELIVQVEKDERGNKGAALTTYIS
LAGRYLVLMPNNPRGGGVSRRVEGDERAELREAMDQLEVPSGMSLIARTAAIGRSAEELQ
WDLNYLLQLWTAIEGAAQGQSGAFLIYQEGSLVIRAIRDYFQPDIGEILIDTDDIFDQAC
QFMAHVMPANVSRVKRYSDDVPLFSRFQIEHQIESAYSRQVNLPSGGAVVIDHTEALVSV
DVNSGRATKGADIEETALRTNLEAADELARQLRLRDLGGLIVIDFIDMESAKNQREVESR
LRDALRHDRARVQTGKISRFGLLELSRQRLRPALAETSYITCPRCNGTGHIRSTESSALH
IVRILEEEAMKENTGAVHLQVPVDVATFLLNEKRVDIARIEMRHKVQLIIVPNRHLETPA
HEIIRLRHDQLNAEDIALASYQMVQKPDEEQQRLPSKANERPPRQEAAVKGIAPSQPAPI
AAAAPAETAPAAAPQPPSKGLFARIISLFTGKKAEAPPPAPAAVAEAAPKRESRGRSERS
SEGRRGNGNRGRRSERDGDPQGGRSPRTERSEGAERAQRGAAPVERPERAERSERAERTE
KTERAEGGRRGRGPRANREEEALERNEKAAEPRATVADDDRLTAQTTSVLAAAATAEALA
PEAAATATPSAEIATEEGAPTEKRRRRGRGRGRRSGEAQANAAGFGEGGTEAQGEESTPA
PAPEADEDAVTASAPSEGAPVVAAAPAIDATVIDTAAATAETAAAPQPLERSTAAVADDS
VPAEAELPVAVSGAVTIEPAPQAPTEAPPAPVRVVTPEVASPDAVAAPSTEAAEAPITPE
AATEAEAAALSPLLIEPLEAEAPSASGALEPEPAATAAVEAPMDAPAPAAAPEPAASRPE
HAPSAPISVPDDGGLIKIETDPSKRVHFGSGAVEPPVRLGRKPRTAAVIVDEPLQQVETR
K
NT seq
3066 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgcatgcttttcaacgcgacgcaggccgaagaactgcgcgtcgcaatcgtggac
ggtcagaaactgatcgatctcgatatcgaatcggccgcaaaagaagaacgcaagagcaac
atctacaaggccgtcatcacccgcatcgagcccagcctcgaggcggctttcgtcgactac
ggcgccgagcgccacggcttcctgccgttcaaggaaatctcgcgcgcctacttccagccc
ggcgtcgatgccggcaaggcctcgatcaaggaagcgctgagggaaggccaggaactcatt
gtccaggtcgaaaaggacgagcgcggcaacaagggcgcggcgctcaccacctacatctca
ctcgccggccgctacctggtgctgatgccgaacaacccgcgcggcggcggcgtgtcgcgc
cgcgtcgaaggcgacgagcgcgccgaactgcgcgaggcgatggaccagctcgaagtcccc
tcggggatgagcctgatcgcgcgcaccgcggcgatcggccgctccgccgaagagctgcag
tgggacctcaactacctgctccagctgtggaccgcgatcgaaggcgcggcgcagggccag
tccggcgcgttcctgatctaccaggaaggcagtctggtgatccgcgcgatccgcgactac
ttccagcccgacatcggcgagatcctgatcgacaccgacgacatcttcgaccaggcgtgc
cagttcatggcccacgtcatgcctgcgaacgtctcccgggtgaagcgctacagcgacgac
gtgccgctgttctcgcgcttccagatcgagcaccagatcgaatcggcctattcgcgccag
gtgaacctgccctcgggcggcgcggtggtgatcgaccacaccgaggcgctggtgtcggtc
gacgtcaactcgggccgcgccaccaagggcgccgacatcgaggaaaccgcgctgcgcacc
aacctcgaagccgccgacgagctcgcccgccagctgcgcctgcgcgacctcggcggcctg
atcgtgatcgacttcatcgacatggagtcggcgaagaaccagcgcgaagtcgaaagccgc
ctgcgcgacgccctgcgtcacgaccgcgcccgcgtgcagaccggcaagatcagccgcttc
ggcctgctcgagctctcccgccagcgcctgcgtccggcgctcgccgaaaccagctacatc
acctgcccgcgctgcaacggcaccggccacatccgcagcaccgaatcgtcggcgctgcac
atcgtgcgcatcctcgaagaagaggcgatgaaggaaaataccggcgcggtgcacctgcag
gtgccggtcgatgtcgccaccttcctcctcaacgaaaagcgcgtcgacatcgcccgcatc
gaaatgcgccacaaggtgcagctgatcatcgtcccgaaccgccacctggaaacgccggcg
cacgagatcatccgcctgcgccacgaccagctcaacgccgaagacatcgccctggccagc
taccagatggtgcagaaaccggacgaagagcagcaacgcctgccgtcgaaggccaacgaa
cgcccgccgcggcaggaagccgcggtcaagggcatcgccccctcccagccggcaccgatc
gcggccgccgcgccggccgagacggctcccgcagcggcaccccagcccccgtcgaagggc
ttgttcgcccgcatcatcagcctgttcaccggcaagaaggccgaggcgccgccgccagca
ccggctgccgtggccgaagctgcaccgaagcgggagagccgcggccgcagcgagcgcagt
agcgaaggccgccgcggcaacggcaaccgtggccgccgcagcgaacgcgatggcgacccc
cagggcgggcgcagcccccgcaccgagcgcagcgaaggcgccgagcgtgcacagcgcggc
gcggctcccgtggaacggcccgagcgcgcggaacgcagtgaacgcgccgagcgcacggaa
aaaaccgaacgcgccgaaggcggccgccgcggtcgcggcccgcgcgccaaccgcgaagaa
gaagcgctcgagcgcaacgaaaaggctgccgagccccgtgccaccgtcgccgacgacgac
cgcctgaccgcgcagacgacaagcgtcctcgcggccgcagccactgccgaggcgctcgcc
ccggaagcggccgccactgcgacgccgagcgccgaaatcgccacggaagaaggcgcgccg
accgagaaacgccgccgtcgcggccgtggtcgcggtcgccgtagcggtgaagcgcaagcc
aacgcagcgggcttcggcgagggcggcaccgaagctcagggtgaagaaagcacgccggct
ccggcccccgaggcggacgaggacgccgtgaccgcctccgccccgagcgaaggcgccccc
gtcgtcgctgcggcgccggccatcgacgccacggtcatcgacactgcggccgccaccgcc
gaaaccgcggcggctccccagccgttggagcgcagcacggcagcggtagcagacgattcg
gtgccggccgaggcggaacttccggtcgccgtgtccggcgcagtgaccatcgaacctgcg
ccgcaagcgccgaccgaagcgcccccggccccggtccgcgtcgtcacgccggaagtagcc
tcgccggatgcggtcgccgcccccagcaccgaggccgcggaggccccgatcacgcccgaa
gcggccaccgaggccgaggcggcagcactttcgccgctgctcatcgaacccctcgaagcg
gaagcaccctccgccagcggcgcgctcgaacccgagcccgcggcaacggcggcggtcgaa
gcgccgatggacgcgcccgcaccggccgcagcccccgagccggcggcgagccggccggag
cacgccccgagcgcgccgatctcggtgccggacgacggtggtctgatcaagatcgaaacc
gacccgtccaagcgcgtccacttcggcagcggcgcggtcgaacccccggtgcgcctcggc
cgcaagccgcgaaccgctgcggtcatcgtcgatgaaccgctgcagcaggtagaaacccgc
aagtaa
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