Thiomicrospira aerophila: THIAE_04620
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Entry
THIAE_04620 CDS
T03589
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
tao
Thiomicrospira aerophila
Pathway
tao03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tao00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
THIAE_04620
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tao03019
]
THIAE_04620
03016 Transfer RNA biogenesis [BR:
tao03016
]
THIAE_04620
Enzymes [BR:
tao01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
THIAE_04620
Messenger RNA biogenesis [BR:
tao03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
THIAE_04620
Transfer RNA biogenesis [BR:
tao03016
]
Prokaryotic type
tRNA degradation factors
THIAE_04620
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
PNPase
S1
KH_1
KH_2
S1_2
SLS1_KH2
Motif
Other DBs
NCBI-ProteinID:
AHF01167
UniProt:
W0DRW7
LinkDB
All DBs
Position
948669..950753
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AA seq
694 aa
AA seq
DB search
MAKHLTRFQYGQHQVTFETGEIARQADGAVIVGMGDTRVLVTVVGAKQAKEGQDFFPLTV
NYQEKAFAAGKIPGGFLKREGRPSEYETLTSRLIDRPIRPLFPKGFMNEVQIIATVLALD
PEVGTEVPAMLGTSAALAISGIPFNGPLGAAIVGYRDGEYLLNPSKLELETSDLELSVAG
TETAVLMVESEASELPEDVMLGAVMFGHQQMQVAIQAIRDMATACGKPRWDWQPAPENTE
LKNQVFDLVRADVEAAYTIADKVARYAALDAAKAKLMAQLAVSETHPDGASEKELEGLFG
KLQKTIVRGRSVAGEPRIDGRDNHTVRAIDCKVGVLPKVHGSALFTRGETQALVVTTLGT
ETDAKIVDELTGSYKDRFMLHYNFPPYSVGECGRMGTPGRREIGHGMLARRGVAAMLPTA
DEFPYTIRVVSEITESNGSSSMATVCGTSMALMHAGVPIAAPVAGIAMGLIKEDAGFAVL
SDILGDEDHLGDMDFKVAGTDQGVTALQMDIKIEGITEEIMRIALDQAKTGRLHILGEMA
KSINSSNTQVADTAPRFTTMKVKADKVREIIGKGGATIRAITEESGAVIELEDDGTVRIA
ATDQASADIAISKINAIVAEPEIGKVYNAKVMKIVDFGAFVSYMPGREGLVHVSQIAEER
VENVADYLQEGQDIQVRLLEIDKQGRVKLSIKGV
NT seq
2085 nt
NT seq
+upstream
nt +downstream
nt
atggcaaaacatttaactcgtttccaatacggtcagcatcaagtcacctttgagacgggc
gaaattgctcggcaagcagatggcgccgttatcgtcggtatgggtgatacccgcgtattg
gtcacggtcgtgggcgcaaagcaggcgaaagagggacaggattttttccctttaacggtt
aattatcaagaaaaagcctttgcagcgggcaaaatccctggtggctttttaaagcgtgaa
ggccgtccgtctgagtatgagacgttgacttcacgtttaattgaccgtcctattcgtcct
ttgtttcccaaaggttttatgaatgaagtgcaaattattgccaccgtgctagccttagac
ccagaagtgggcaccgaagtgcctgcgatgctgggcacctcagcggccttagccatctca
ggtattccgtttaatggcccgttaggtgccgcgattgttggctatcgtgatggtgagtat
ttattgaacccatcaaaattagagctagaaacctctgaccttgagttgagtgttgctggc
acggaaaccgccgtattaatggtggaatcagaagccagcgaattacccgaagatgtcatg
ttaggcgcggtgatgtttggtcatcagcaaatgcaggttgcgattcaagcgatccgtgat
atggcaacggcttgtggcaagccacgttgggactggcagcctgcgccagaaaacaccgaa
cttaaaaatcaagtatttgatctagtccgtgccgatgttgaagcggcttataccattgca
gacaaagtagcgcgttatgcggcgttggatgcggcgaaagcgaaactcatggcgcagctt
gccgtttcagaaacccatcctgatggcgcgtctgaaaaagaattagaaggcttgtttggt
aagttacaaaaaaccattgtacgtggacgttcggtagcgggtgagccgcgtattgatggt
cgtgataaccacactgttcgcgcaattgattgtaaagtcggcgtcttgcccaaggtgcat
ggttcagcgttatttacccgtggtgaaacccaagccttggttgtgacgacactcggtaca
gaaaccgatgccaaaattgttgatgaactcaccggttcctataaagaccgttttatgttg
cactacaacttcccgccttactcagtaggtgagtgtggtcgtatgggcacgccgggtcgt
cgcgaaatcggtcatggtatgttagcacgtcgtggtgtggcagccatgttaccgacggct
gatgaatttccttataccattcgtgtggtgtcagaaattactgaatccaatggttcaagt
tcgatggcgaccgtctgtggtaccagtatggcgttgatgcatgctggtgtgccgattgcc
gctccagtagcgggtattgcgatgggcttgattaaagaagacgctggttttgcggtcttg
tctgacattttgggtgacgaagatcatttaggtgatatggattttaaggtagccggaacc
gatcaaggtgtcaccgcgttgcagatggatattaaaatagaaggtattaccgaagaaatc
atgcgtattgcgcttgaccaggccaaaacaggtcggttgcatattttgggcgagatggct
aagtcaattaattcgtccaatacccaggtggctgacaccgcaccgcgttttactactatg
aaagtgaaggccgataaggttcgtgaaattattggtaagggtggtgcgactattcgcgcg
attacggaagaaagtggtgcggtaattgaattagaagatgatggcacggtgcgtattgcc
gcgacggatcaagcttctgctgatattgcgatttccaagattaatgcaatagttgccgag
cctgaaattggtaaggtatataatgcaaaagtaatgaagattgttgattttggtgcattt
gtgtcttacatgcctggtcgtgaaggcttagtgcatgtttctcaaatcgctgaagagcgc
gttgaaaacgtggcagattatcttcaggaaggtcaagatattcaggtgcgtttgttagaa
attgacaagcaaggtcgcgtgaagttatcaattaagggtgtgtaa
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