KEGG   Tabrizicola sp. K13M18: EI545_04250Help
Entry
EI545_04250       CDS       T05742                                 

Gene name
ligD
Definition
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
taw  Tabrizicola sp. K13M18
Pathway
taw03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:taw00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    EI545_04250 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:taw03400]
    EI545_04250 (ligD)
Enzymes [BR:taw01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     EI545_04250 (ligD)
DNA repair and recombination proteins [BR:taw03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     EI545_04250 (ligD)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_M DNA_ligase_A_C
Motif
Other DBs
NCBI-ProteinID: AZL58118
LinkDB All DBs
Position
879187..881640
Genome map
AA seq 817 aa AA seqDB search
MRDFKATPEPKGRKHKSTGALVFVVQKHAARRLHYDLRLEMDCVLKSWAVTRGPSLVPGE
KRLSVHVEDHPMDYGDFEGTIPEGQYGAGTVIVWDRGTWTPVIDPHKGYAKGHLEFELKG
EKLTGRWHLIRMRGKPKDKRENWLLIKGEDASARDPSAPDILEQSPQSVTSGRTIEAVAG
KPARKTPARKTRTRKTTEQGTDKPMPGFLPPMLASLVKATPGDDRWLHEIKFDGYRIQAH
VEDGKARLFTRSGRDWTDRFGAALADALTALPVSQAVLDGEVVVETGGRSSNFSALQADL
AEGRTDRMTFYAFDLLHLDGRDLTPLPLVERKRLLATILRSAKDPIRLSEHLSDQGAIVL
RHACRMGLEGIISKLRDSPYRSGRSNAWVKSKCSARQEFVIGGFVPSTASPRAIGSLVMG
VYDGDRLRSVGRVGTGFSVAVAEDLYTRLTALETPQSPFDPPLTGQAKRGVRHVRPDLVA
EVDFRAWTDDGNLRHAAFRGLREDKDPQDVTGEGLSTPPSAPEDTTPPPALPVRRIKLTN
PDRVYWPDAGITKADLADYYADVWTWIAPHVSGRPLALLRCPNGISGQKFFQKHDWKGMN
AAILRVADPTDPKDAPSIAIADFDGLTALAQAASLEIHPWGSTLADWERPDRIVIDLDPG
DGVGWDDLTFAAQEVRQRLKDAELAAFVKTSGGKGLHVVAPLVAKAEWPAVKSFCRQFAR
SMAGDDPARYVATITKSKRQGKILIDYLRNQRGATAVAAYSTRARPGGLVSAPVSWDELD
SGLSPADFTIRTMPARLAALRRDPWSDFAASARPLPG
NT seq 2454 nt NT seq  +upstreamnt  +downstreamnt
atgcgcgacttcaaggcaaccccggaacccaaggggcgcaagcacaaatccaccggagct
ttggtgtttgtcgtccagaaacacgccgcccgccggctgcattacgatttgcggctggaa
atggattgcgttctgaaaagttgggccgtcacccgcggccccagccttgttccgggtgaa
aagcgactgtccgtgcatgtcgaggatcacccgatggactacggtgacttcgaaggcacg
atcccggaaggccagtacggcgcaggcacggtgattgtctgggaccgtggcacctggacc
ccggttatcgatccgcacaagggctatgccaaggggcatctggagttcgagctcaagggc
gaaaagctgaccggtcgctggcatttgatccgcatgcgcggcaagcccaaggacaagcgc
gaaaactggctgttgatcaagggcgaggatgccagcgcccgcgacccgtccgccccggat
attctggaacaaagcccgcagtcggtgacgtctggtcgcacgatcgaggccgttgccggc
aaacccgcccgcaagaccccggcgcgaaagacccgcacccgaaagaccacggagcaaggc
acggacaaaccgatgccgggctttctgccgccaatgctcgcctcacttgtcaaggccacg
ccgggcgacgaccgctggctgcatgagatcaagttcgacggctaccggattcaggcccat
gtggaggacggcaaggcccgtcttttcacccggtcggggcgggactggactgaccgcttc
ggtgcggcccttgccgatgcgctgactgcgctgccggtcagtcaggctgtactggacggc
gaagtggtggtggaaacaggcggtcgttcgtccaacttttctgcgctgcaggctgatctg
gctgaaggccgcaccgaccggatgaccttttatgccttcgatctgctccaccttgatggg
cgcgatctgacgccgctgccgctggtcgaacgcaagcgcctgctggcgactatcctgcgg
tccgcgaaggatccgatccggcttagcgagcacctgtcggaccagggtgccatcgtcctc
cgccacgcctgccgcatggggcttgaggggatcatttcgaaactgcgcgacagtccctat
cggtcagggcgcagcaatgcctgggtcaagtcgaaatgctcggcccggcaagaattcgtg
atcggcggcttcgtgccttccaccgcctcgccccgtgcgatcgggtcgctggtgatgggt
gtctatgatggcgaccggttgcgcagcgtggggcgtgtcggcaccggcttttccgttgcc
gtggccgaggacctttacacccggctgaccgcgctggaaacgccgcagtcgccctttgat
ccgccgctcacgggtcaggcaaagcgcggggtgcgccatgtcaggcccgatcttgtcgcc
gaagtcgatttccgcgcctggacggatgacggcaacctgcgccacgccgccttccgcggc
ctgcgcgaggataaggacccgcaggacgtcacgggcgagggcctctcgacgcccccgtct
gcgccagaggacacgacaccgccccctgccctgccagtgcggcggatcaagctgaccaac
cccgaccgggtctattggccagacgcaggcatcaccaaggccgaccttgccgactactat
gccgacgtctggacctggatcgccccgcatgtcagtggccggcccttggcccttctgcgt
tgcccgaacgggatcagcggccagaaattctttcaaaaacacgactggaagggcatgaat
gctgccatcctgcgcgtggcggacccgacagatccgaaggacgcgccgtcaattgccatc
gccgactttgacggcctgaccgcccttgcccaagcggccagtctggagattcacccttgg
ggcagcacccttgcggattgggaacggcctgaccgcattgtcattgaccttgatcccggt
gacggtgtcggctgggatgacctgacctttgctgcgcaagaggttcggcaacgccttaaa
gacgcggagcttgcggcctttgtcaaaacctcgggcggcaaagggttgcatgtcgtggcc
cctttggtcgcaaaggccgaatggcctgcggtcaagtccttctgccgccagtttgcacgc
agcatggcaggggacgatcccgcacgttatgtggcgacgatcaccaaatccaagcggcag
ggaaagatcctgatcgactatctgcgcaaccagcgcggggcgactgcggtggccgcctac
tctacccgcgcacggccggggggtctggtgtcggcccccgtcagctgggacgaactggac
agcgggctgtcccccgccgacttcaccatccgcacgatgcccgcccgactggccgccttg
cgccgcgatccgtggagcgactttgccgcgtctgcccgaccactgccgggttaa

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