Thiobacillus denitrificans: Tbd_0399 Help Entry Tbd_0399          CDS       T00275                                  Name (GenBank) RNA polymerase I subunit A   KO K03046   DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] Organism tbd  Thiobacillus denitrificans Pathway tbd03020   RNA polymerase Brite KEGG Orthology (KO) [BR:tbd00001]  09120 Genetic Information Processing   09121 Transcription    03020 RNA polymerase     Tbd_0399  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03021 Transcription machinery [BR:tbd03021]     Tbd_0399    03400 DNA repair and recombination proteins [BR:tbd03400]     Tbd_0399 Enzymes [BR:tbd01000]  2. Transferases   2.7  Transferring phosphorus-containing groups    2.7.7  Nucleotidyltransferases     2.7.7.6  DNA-directed RNA polymerase      Tbd_0399 Transcription machinery [BR:tbd03021]  Prokaryotic type   Bacterial type    RNA polymerase     Core subunits      Tbd_0399 DNA repair and recombination proteins [BR:tbd03400]  Prokaryotic type   SSBR (single strand breaks repair)    NER (nucleotide excision repair)     TCR (transcription coupled repair) factors      DNA-directed RNA polymerase complex (RNAP)       Tbd_0399 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 Biotin_lipoyl_2 Peptidase_M23 Apocytochr_F_C Motif Other DBs NCBI-ProteinID:  AAZ96352 UniProt:  Q3SLQ5 LinkDB All DBs Position 428560..432756 Genome browser AA seq 1398 aa AA seqDB search MKALLDLFKQATHEEEFDAIKIGLASPDKIRSWSYGEVKKPETINYRTFKPERDGLFCAK IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTLSKVRRERMGHIELASPVAHIWFLKSL PSRLGMVLDMTLRDIERVLYFEGFVVVEPGMTPLNRGQLLTEEDYLGKLEEYGDEFKALM GAEGVRELLRSLDVASEVETLHSEISKTGSDTKLKKLSKRLKILEGFQKSGIKPEWMILE VLPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELKAPEIIVRNEKRMLQ EAVDSLLDNGRRGKAMTGANKRPLKSLADMIKGKSGRFRQNLLGKRVDYSGRSVIVVGPT LKLHQCGLPKKMALELFKPFIFNRLEVLGLATTIKAAKKMVEDEEPIVWDLLEEVIREHP VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQAEA RTLMLASNNVLSPANGEPIIVPSQDIVLGLYYMTREKVNAKGEGMMFADVTEARRAYDNR EAELHARVTVRIKEVTLDENKNRVETVKRVETTLGRALLSEILPPGLPFSFVDKALKKKE ISKLINASFRRCGLRETVIFADKLMYTGFTFATRAGMSIAIKDMLIPQEKGQILGAAEAE VKEIESQYTSGLVTQGERYNKVVDIWGRAGDAVAKAMMGQLGGEKVTDRQGKEVTQESFN AIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNMLQYFISTHGAR KGLADTALKTANSGYLTRRLVDVTQDLVVTEDDCGTKNGLLVKALVEGGEVVEALRERIL GRVAASDIINPETQETVFEAGTLLSEDVVDTIEALGIDEVRVRTPLTCETRYGLCANCYG RDLGRGYLVNVGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAASQLEAKSNGAVQY TATMRYVTNARKELVAISRSGEILIADDSGRERERHKVPYGATLMVTDGAKIKAGAVLAT WDPHTRPIITEYAGRVRFENVEEGVTVAKQVDDVTGLSTLVVIDPKRKSTSTKGVRPQVK LLDDAGNELKIAGTDTLVNITFQIGSIITVKDGQDVAVGDVLARIPQETSKTRDITGGLP RVAELFEARSPKDAGVLAEVTGTVSFGKDTKGKQRLVITDLDGVAHEYLITKEKHVTAHD GQIVQKGEMIVDGPVDPHDILRLQGVEALASYITDEVQDVYRLQGVKINDKHIEVIVRQM LRRVVVADPGDTGLIPGEQVERSEVLQINDEMIAAGKEPAVYDPILLGITKASLSTDSFI SAASFQETTRVLTEAAIMGKKDELRGLKENVIVGRLIPAGSGLAYHNTRRRQAAGEDMGA DRLLEGGETPAAENQEVA NT seq 4197 nt NT seq  +upstreamnt  +downstreamnt atgaaagcactgttggatctattcaagcaggccacccacgaggaagaattcgacgccatc aagatcggcctggcgtcgccggacaagatccgctcctggtcgtacggcgaagtgaagaag ccggagaccatcaactaccgtaccttcaagccggagcgtgacggcctgttttgcgccaag atcttcggtccggtcaaggactacgagtgcctgtgcggcaagtacaagcgcctcaagcac cgcggcgtgatctgcgagaagtgcggcgtcgaagtgacgctatcgaaggtgcgtcgcgag cgcatgggccacatcgagctcgccagcccggtcgcccacatctggttcctgaagtcgctg ccgagccggctcggcatggtgctcgacatgacgctgcgcgacatcgagcgcgtgctctac ttcgaaggcttcgtcgtcgtcgagcccggcatgacgccgctcaaccgcggccagctgctg accgaggaggactacctcggcaagctcgaggagtacggcgacgagttcaaggcgctcatg ggcgccgagggtgtgcgtgagctgttgcgttcgctcgacgtcgccagcgaagtcgaaacc ctgcattccgaaatcagcaagaccggctccgacaccaaactcaagaagctgtccaagcgc ctcaagatcctcgagggtttccagaagtcgggcatcaagcccgaatggatgatcctcgag gtgctgccggtgctgccgccggagctgcgtccgctggtgccgttggacggcggccgcttc gcgacctccgacctcaacgatctctaccgccgcgtcatcaaccgcaacaaccgcctgaag cggctgctggagctgaaggcgcccgagatcatcgtgcgcaacgaaaagcgcatgctgcag gaagcggtcgattcgctgctcgacaacggccgtcgcggcaaggcgatgaccggcgccaac aagcgtccgctgaagtcgctggccgacatgatcaagggcaagagcggccgcttccgtcag aacctgctcggcaagcgcgtcgactactcgggccgttcggtcatcgtcgtcggcccgacg ctcaagctgcatcagtgtggcctgccgaagaagatggcgctcgaactcttcaagcccttc atcttcaaccgcctcgaggtattggggctcgcgaccacgatcaaggccgcgaagaagatg gtcgaggacgaagagccgatcgtctgggatctgctcgaagaggtcatccgcgagcatccg gtgatgctgaaccgcgcgccgacgctgcaccgcctgggcatccaggcgttcgagcccgtg ctgatcgaaggcaaggcgatccagctgcatccgctcgtctgtgcggcgttcaacgccgac ttcgacggcgaccagatggccgtccacgtgccgctgtcgctcgaagcgcaggccgaagcc cgtaccctgatgctggcgtcgaacaacgtgctgtcgcccgccaacggcgagccgatcatc gtcccctcgcaggacatcgtgctgggtctctattacatgacgcgcgagaaggtgaatgcg aagggcgagggcatgatgttcgccgacgtgaccgaagcgcgccgcgcctacgacaaccgc gaggccgaactgcatgcgcgcgtgacggtgcgcatcaaggaagtgacgcttgacgagaac aagaaccgcgtcgagaccgtcaagcgcgtcgagaccacgctcggtcgcgcgctgctgtcc gaaatcctgccgccggggctgcccttcagcttcgtcgacaaggcgctgaagaagaaggag atctccaagctcatcaacgccagcttccgccgctgtggcctgcgcgagacggtgatcttc gccgacaagctgatgtacaccggcttcacgttcgcgacccgcgcgggcatgtcgatcgcg atcaaggacatgctgattccgcaggagaagggccagatcctcggcgcggccgaagccgaa gtgaaggaaatcgaatcgcagtacacctcgggcctcgtcacccagggcgagcgctacaac aaggtcgtcgacatctgggggcgcgcgggcgacgccgtcgccaaggcgatgatgggacag ctcggcggcgagaaggtcaccgaccgtcagggcaaggaagtcacccaggagtcgttcaac gcgatctacatgatggccgactcgggtgcgcggggctccgctgcccagatccgccagctc gcgggtatgcgcggcctgatggcgaagccggacggctcgatcatcgagacgccgatcacg gcgaacttccgcgaaggcctgaacatgcttcagtacttcatctcgacgcacggcgcgcgc aaaggcctcgccgacaccgcgctgaagaccgcgaactccggctacctgacgcgccgcctg gtcgacgtgacgcaggatctcgtggtgaccgaggacgactgcggcaccaagaacggcctg ctcgtcaaggcactggtcgagggtggcgaggtcgtcgaggcgctgcgcgagcgcatcctc gggcgcgtcgcggcgagcgacatcatcaatccggaaacgcaggaaaccgttttcgaagcc ggtaccctgctatccgaggacgtggtcgacaccatcgaggcgctcggcatcgacgaggtg cgcgtgcgcacgccgttgacctgcgagacgcgctacggcctgtgcgccaactgctacgga cgcgacctcggccgcggctacctcgtcaacgtcggcgaggcggtcggcgtgatcgccgcg cagtcgatcggcgagccgggcacccagctcacgatgcgcaccttccacatcggtggtgcg gcctcgcgagccgcggcggcgagccagctcgaagcgaagtcgaacggcgccgtgcagtac accgcgacgatgcgttacgtcaccaacgcgcgcaaggaactcgtggcgatctcgcgcagc ggcgaaattctcatcgccgacgacagcggccgcgagcgggagcgccacaaggtgccgtac ggcgcgacgctcatggtcaccgacggcgccaagatcaaggccggcgccgtgctcgcgacc tgggacccgcatacccgtccgatcatcaccgagtacgccggccgcgtgcgcttcgagaac gtcgaggaaggcgtgacggtcgccaagcaggtcgacgacgtcaccggcctgtcgacgctc gtggtcatcgatcccaagcgcaagagcacgagcaccaagggcgtgcgcccgcaggtcaag ctgctcgatgacgccggcaacgaattgaagatcgcgggtacggacacgctcgtcaacatc accttccagatcggctcgatcatcaccgtgaaggacggtcaggacgtggccgtgggcgac gtgctcgcgcgtatcccgcaggaaacgtcgaagacccgcgacatcaccggcggtctaccg cgtgtggccgagctgttcgaggcgcgttcgccaaaggacgccggcgtgctggccgaagtc accggtactgtgtccttcggcaaggacaccaaaggcaagcagcgcctggtcatcaccgac ctcgacggcgtcgcgcacgagtatctgatcacgaaggagaagcatgtcaccgcccacgac ggccagatcgtccagaagggcgaaatgatcgtcgacggcccggtcgatccgcacgacatc ctgcgtctgcaaggcgtcgaggcgctcgcctcctacatcaccgacgaagtccaggacgtc taccgtctgcagggcgtgaagatcaacgacaagcacatcgaggtcatcgtgcgtcagatg ctgcgtcgtgtcgtcgtcgccgatccgggcgacaccggcctcatcccgggcgagcaggtc gagcgttcggaagtgctgcagatcaacgacgaaatgatcgccgcgggcaaggagccggcg gtctacgatccgatcctgctcggcatcaccaaggcgtcgctgtcgaccgactcgttcatc tcggcggcttccttccaggaaacgacccgcgtcctcaccgaggcggcgatcatgggcaag aaggacgagctgcgcgggctgaaggaaaacgtgatcgtcggccgccttatcccggcgggc agcggcctcgcctaccacaacacccgtcgccgtcaggccgcgggcgaggacatgggagcc gaccgtttgctcgagggcggcgaaaccccggcggccgagaatcaggaagtggcttga

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