Treponema brennaborense: Trebr_1267
Entry
Trebr_1267 CDS
T01489
Definition
(GenBank) ribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
tbe
Treponema brennaborense
Brite
KEGG Orthology (KO) [BR:
tbe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
tbe03016
]
Trebr_1267
Enzymes [BR:
tbe01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Trebr_1267
Transfer RNA biogenesis [BR:
tbe03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
Trebr_1267
SSDB
Motif
Pfam:
RNB
FAM24
Other DBs
NCBI-ProteinID:
AEE16695
UniProt:
F4LM16
LinkDB
Position
complement(1500609..1502528)
AA seq
639 aa
MLQKNSLVLYKTQPAVIIETGEKYTIEYCTALPTVGGKSASFAQQKVREKDITPFPGNVS
ALKTDLPAMLAQAGRTPPDISASVKAQLSDVYELLASDPETAEAAVSFSDIAALTGTQQA
SDVWSLYLALKTEPFFADASVPGSGDFSFTLRTAAEMQAITEKQNTKNREQEIRAAFIAR
LKQRKLQLPDDAQLMQDVEALALGKTDKSRTLKEAGFSETPEKAHKLLLDTGIWTAERNP
YPSRWGLSMQSAAEHLAHPPQEDRVTVSGVSYAIDNAWSTDPDDAIAFDGTHVWVHVADP
ASIVAPDSTIDTAARNRGTTLYIPEGAARMLAEESLEDYALGLAPESRALSFKILLDETG
AVADCDILKTIVKVERLTYVQADGKKETPELAPLYAIAKRNEERRIKAGAVSISLPEVHI
AAAGGDVSITPVMQTQASAVVREFMLLAGEAAARFAFKHAIPFPYVSQERPDIPKDLPEG
LAGQYRLRRCMRSRSIGITPLQHAGLGLGMYSQVTSPLRRYGDLVAHQQLRAFIGKKDLL
GKDELLERIAAGDAAASTAVKAERKSNLHWTLVYLSRNPEWTGQAVVVELKGKQAVCLIP
ELGQETVLNPSRPVQLNDTLTVRAGNISIPDLLVTFTAV
NT seq
1920 nt
+upstream
nt +downstream
nt
atgttgcagaaaaattcgctcgttttatataagacacagccggccgttatcatcgaaacc
ggtgaaaaatacactatagaatattgtaccgcgctgccgacggtcggcggaaagtccgcc
tcgtttgcacagcaaaaagtccgtgaaaaggacatcacgccgttccccggaaacgtatcc
gccttgaaaacagatctgcccgccatgttggcgcaagccggccggactcctcccgatatt
tccgcttccgtaaaagcgcagctttctgacgtgtacgaactgctcgcatccgatccggaa
actgctgaggcggcggtgtccttttcagatatcgccgcactgaccggaacgcagcaggcg
tccgacgtgtggagtttgtatctcgcgctgaaaacggaacctttttttgccgacgcaagc
gttccgggaagcggtgatttttcgtttacgctccgaaccgccgccgaaatgcaagccata
accgaaaaacagaatacgaaaaacagggaacaggaaattcgcgctgcgttcattgcccgt
ctgaaacagcggaaactgcagcttccggacgacgcacagctcatgcaggacgtggaagca
ctcgcactcggaaaaaccgataaatcccgtacgctgaaagaagcgggtttttccgaaacg
cccgaaaaagcgcataagctgctgctcgacaccggtatttggactgcggaacggaatccc
tatccgtcgcgctggggactttccatgcagtctgcggcggaacatcttgcgcatccgccg
caggaagatcgcgtaacggtttccggcgtttcgtatgcaatcgacaacgcctggagtacc
gatcccgacgacgcgatcgcgttcgacggaacgcacgtttgggtgcacgttgccgatccc
gcgtctatcgtggcacctgattctacgatagatacggccgcacggaaccgcggaacgacg
ctctacattcccgaaggcgccgcccgtatgctggcggaagaatcgttggaagattacgca
ctcggactggcacccgaatcgcgcgcgctttcgttcaaaattttgctcgatgaaaccggc
gccgtagccgactgcgatatactgaaaacgatcgtaaaagttgaacggctcacgtacgtt
caagccgatggaaaaaaagaaacgccggaactcgccccgctttatgcgatagcgaagcgg
aacgaagaacgccgtataaaagccggagcggtatccatttcactgcctgaagtacatatt
gcggcagccggcggcgacgtttcgatcacaccggtaatgcaaacgcaagcgtcagccgtc
gtacgggagttcatgctgctcgccggtgaagccgccgcgcggtttgcgttcaaacacgca
attccctttccgtacgtcagtcaggaacgtcccgatattcccaaagatctgccggaaggt
cttgccggtcaataccgcctgcgccgctgcatgagaagccgcagcatcggcataacgcct
ctccagcacgcgggactcggactcggcatgtacagtcaggtaacgagcccgctgcgccga
tacggagatttggtggcacatcagcagctgcgcgcctttatcggtaaaaaagacctgctg
ggcaaagacgaattgcttgaacggatagcggcaggcgacgcggcggcaagcaccgccgta
aaagcggagcgcaaaagtaatctgcactggacgctcgtgtacttgagccgtaatcccgaa
tggacgggacaagccgtcgtcgtagaactgaaaggcaaacaggcagtctgtcttattccc
gaactcggacaggaaaccgtactgaatccgtcccggccggtacaactgaacgacacgctt
accgtgcgcgccggaaacatctctattcccgatttgctcgttacgttcaccgccgtatag
DBGET
integrated database retrieval system
