KEGG   Thermobispora bispora: Tbis_2438Help
Entry
Tbis_2438         CDS       T01236                                 

Definition
(GenBank) DNA ligase I, ATP-dependent Dnl1
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
tbi  Thermobispora bispora
Pathway
tbi03030  DNA replication
tbi03410  Base excision repair
tbi03420  Nucleotide excision repair
tbi03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:tbi00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    Tbis_2438
   03410 Base excision repair
    Tbis_2438
   03420 Nucleotide excision repair
    Tbis_2438
   03430 Mismatch repair
    Tbis_2438
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:tbi03032]
    Tbis_2438
   03400 DNA repair and recombination proteins [BR:tbi03400]
    Tbis_2438
Enzymes [BR:tbi01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     Tbis_2438
    6.5.1.6  DNA ligase (ATP or NAD+)
     Tbis_2438
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     Tbis_2438
DNA replication proteins [BR:tbi03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    Tbis_2438
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     Tbis_2438
DNA repair and recombination proteins [BR:tbi03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     Tbis_2438
   NER (nucleotide excision repair)
    Other NER factors
     Tbis_2438
   MMR (mismatch exicision repair)
    Other MMR factors
     Tbis_2438
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_C DNA_ligase_A_N RNA_ligase HTH_15
Motif
Other DBs
NCBI-ProteinID: ADG89141
UniProt: D6Y4G5
LinkDB All DBs
Position
2852968..2854497
Genome map
AA seq 509 aa AA seqDB search
MLLIELARTSAAVAADSSRKAKIGHLAELLRRAGPDEAEIAIAYLSGELPQRQIGVGWRS
LLDLPGPRQIATATVTQVDAMLERIKAQSGPGSQAARRELLGELFASLTEQEQSFLRRLL
AGELRQGALEGVMIEAIAAAAEVPAQEVRRALTLRGSLPAVGAAALRGGVAALREFRLEV
GRPVAPMLAQSAPSVTAALEKIGGPAAIEWKFDGVRVQAHRKGGWVGVFTRTLDDITAQV
PELVEAVLALPDDDLVLDGEVIALRPDGRPEPFQVTSGRVASRTDVAALRKSVPLSVFFF
DALRVGGADLLDLPGSERHAALEAAVPAELIAPRIVTGDPDEGERFFSDAIQRGHEGVVV
KSPQTPYTAGRRGAGWIKVKPRHTLDLVVLAAEWGSGRRTGWLSNLHLGAYDPETGGFVM
LGKTFKGLTDELLAWQTERLLRLAVGPTDGWVVTVKPELVVEIAFDGVQRSPRYPGGMAL
RFARVLRYRPDKRPEQADTVAAVRALLPR
NT seq 1530 nt NT seq  +upstreamnt  +downstreamnt
gtgctgctcatcgaactggcccggacgtcggcggcggtcgccgcggactcatcccgcaag
gccaagatcgggcacctcgccgagctgttgcgccgggccggccccgatgaggcggagatc
gcgatcgcctacctctccggtgagctgccgcagcggcagatcggcgtcggctggcgcagc
ctgctggacctgcccggcccgcggcagatcgccacggcgaccgtcacgcaggtcgacgcg
atgctcgagcggatcaaggcccagtccggccccggatcgcaggccgctcggcgggagctg
ctcggcgagctgttcgcctcgctgaccgagcaggagcagtcgttcctgcggcggctgctc
gccggtgagctgcgccagggcgcgctcgagggcgtgatgatcgaggcgatcgccgccgcg
gccgaggtcccggcccaggaggtccgccgggccctcaccctgcgcggctcgctccccgcg
gtgggggcggcggcgctgcggggcggggtcgccgccctgcgggagttccggctggaggtc
ggccggccggtcgcgccgatgctcgcccagagcgcgccgagcgtcaccgcggccttggag
aagatcggcggccccgccgcgatcgagtggaagttcgacggcgtccgggtgcaggcgcac
cggaagggcggctgggtcggggtgttcacccgcaccctcgacgacatcaccgcccaggtg
cccgagctggtggaggccgtgctcgccctccccgacgacgacctggtgctcgacggcgag
gtgatcgcgctccggcccgacgggcggcccgagccgttccaggtcacctccggccgggtg
gcgagccgcaccgatgtggccgcgctccgcaagagcgtgccgctcagcgtcttcttcttc
gacgccctgcgcgtcggcggggccgatctgctcgacctgcccggctcggagcggcacgcc
gcgctcgaggcggccgtcccggccgagctgatcgcccccaggatcgtgaccggggacccg
gacgagggcgagcggttcttctccgacgccatccagcgcggccacgagggcgtggtggtg
aagtccccgcagacgccgtacaccgcgggccggcgcggggcggggtggatcaaggtcaag
ccgcggcacaccctcgatctcgtggtgctggccgccgaatggggcagcgggcggcgcacc
gggtggctctccaacctgcacctcggcgcatacgacccggagaccggcggcttcgtgatg
ctcggcaagaccttcaagggcctcaccgacgagctgctggcctggcagaccgagcggctg
ctgcggctcgccgtgggccccaccgacggctgggtggtcacggtgaagcccgagctggtc
gtggagatcgccttcgacggggtgcagcgctcgccccggtaccccggcgggatggcgctc
cggttcgcccgggtgctgcgctaccggccggacaaacggcccgagcaggccgacaccgtg
gccgcggttcgcgcgctgctcccccgctga

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