Trypanosoma brucei brucei: Tb927.7.4900 Help Entry Tb927.7.4900      CDS       T01013                                  Name (RefSeq) 5'-3' exonuclease XRNA, putative   KO K12618   5'-3' exoribonuclease 1 [EC:3.1.13.-] Organism tbr  Trypanosoma brucei brucei Pathway tbr03008   Ribosome biogenesis in eukaryotes tbr03018   RNA degradation Brite KEGG Orthology (KO) [BR:tbr00001]  09120 Genetic Information Processing   09122 Translation    03008 Ribosome biogenesis in eukaryotes     Tb927.7.4900   09123 Folding, sorting and degradation    03018 RNA degradation     Tb927.7.4900  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:tbr03019]     Tb927.7.4900    03009 Ribosome biogenesis [BR:tbr03009]     Tb927.7.4900    03016 Transfer RNA biogenesis [BR:tbr03016]     Tb927.7.4900    03036 Chromosome and associated proteins [BR:tbr03036]     Tb927.7.4900 Messenger RNA biogenesis [BR:tbr03019]  Eukaryotic type   mRNA surveillance and transport factors    mRNA cycle factors     Common to processing body (P body) and stress granule      Tb927.7.4900   mRNA degradation factors    5'-3' decay     5' exonucleases      Tb927.7.4900 Ribosome biogenesis [BR:tbr03009]  Eukaryotic type   Pre-60S particles    RNases     Tb927.7.4900 Transfer RNA biogenesis [BR:tbr03016]  Eukaryotic type   tRNA degradation factors    Rapid tRNA decay (RTD) pathway factors     Tb927.7.4900 Chromosome and associated proteins [BR:tbr03036]  Eukaryotic type   Gene silencing    piRNA pathway     Tb927.7.4900 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  XRN_N XRN_M XRN1_D1 SH3_12 XRN1_D2_D3 Motif Other DBs NCBI-GeneID:  3658701 NCBI-ProteinID:  XP_846113 UniProt:  Q57XA6 LinkDB All DBs Position 7:complement(1288490..1292746) Genome browser AA seq 1418 aa AA seqDB search MGVPKFFRWVAERYPSVITPFRDFPPPVDNLYLDMNGIIHNCTHPNDADATHKAPTEKAM VEAMFSYLEKLFNAIQPRKCFFLAVDGVAPRAKMNQQRQRRYRSGYEMMVAREEALSRGE ELPEEADVFDSNCITPGTDFMVRISEHFQYFIMMKMSTDPAWQNCSVIYSGHDHPGEGEH KIVEFIRRRKMQPDYGPNETHCMYGLDADLVMLALATHEPHFVLLREVVTFGFGQESRRA REQREQDESDGIVADKSYQKPDEFVLFHVNVLRDYLDLEVRERLGDKLPTNYDLERVVDD FVLMCFFIGNDFLPSIPTLGIHDGSLVQMLDLYAQRVLLAHTYLTDMGRIDWRAVEGWLQ GLADLEFTTIKAREAQEQEYQRRMAQQCGEHRAATISTSTVESLREYKDRYYRDKHQFAM GWDPQGEDMAKLRLHYIEGIMWVIGYYYQGPPSWKWYFPHHYAPMASDLVNLPAVAACVK FDPGKPFLPHQQLLAVLPPMSYRSMPRAYWPLLRSKNSPLARYFPEKLQIDREGTRAPWE GVVLIPFIEERTLLAAYETVQDRVTPEERKNNRLGLPTLYAYDPTIEAYEVPNSLFGPLR RTTVRRDAFDFPPLTKFIPRLCTGVCTGEQQFEGFTTLRSKWRYITPQRESGVVTIFGMP ARGESLLLGLKDSFNAIAAHEVATLVGQEVLVGFPHYRRARVVAVSDKRVHISANINLEG VSCGANVRELNRDASMNIAKELETHRQCMREKLGMSVSNLTVLVYVNLFTGMRMTRKGRV VRNFSKDQTCYALPLVARLQDVKLTEDSRYVERDRVEWDNRFGSRVILVGAEPKSMKGKD QQLYGSSGVVVRSSPDAEGTFTVAARVFQKPVSIPHVLLDYASSRNWVSMPDVSNEVRVG PLALKHLVGSVRTSPQYGCREIGLGLIYTRNNLVRIGYAKQTVRGGKAWGAPGGRLGAGL ENSDDAFGRPVQDAAPAGHYLESLQKGESRPRSSRPMQYMTWFSRKAVVLIKTYVERFKP LVDRLESIASSPQALDPPQFMTGEWADNDVDDVLRSIEEFIESCGIQSVPLVAAQDDAFP REHVRMLEEELDRQGPRPLEDRMLSSVARRCLYFPVTRCAGGHISQLPLPQEQTVHLGSR VVNCRACGAAPFGATGTVVRLLSTGHDAEVVYDDPFVGGSYFDGRLRQPRGSISKLSTLL VLNKPSGDESESSQGQNGSVVQNLKSICKKLQQKEDDHDQQQQHGRGVGIPSTEGTPSIP KPRSAMGETSASGIAAGRNVVSPSSLTVSGGSGGIQVAELMGKLASSKATSPDAGLNICG ATYAPTVASNKLPVAPRSVTTTAAPGSGTFSVPLPRTSGNANRTNSGDGEGDKGCRKPGF SFTVPSEVLNGEFQIRPGEGALLLKRMISQHLSGDRKR NT seq 4257 nt NT seq  +upstreamnt  +downstreamnt atgggtgttccaaaattctttcgatgggtagcggagcgctacccctcagtgatcacccca tttcgtgattttccacctccagttgataatctgtacctggatatgaatggtattattcac aactgcacacatcccaatgatgcggatgccacacacaaagcgcccacggagaaggctatg gtcgaggccatgttttcgtacttggaaaaacttttcaatgcgattcagccccgaaagtgc ttcttccttgccgttgatggcgtggccccacgagccaagatgaaccagcaacggcagcgg cgttaccgcagtgggtacgaaatgatggttgcacgggaggaggctttatctcgcggcgag gaacttcccgaggaagctgatgtgtttgacagtaactgcattaccccgggaacggacttc atggtgcgcataagtgaacattttcaatactttatcatgatgaagatgtcgacggaccct gcgtggcaaaactgtagcgttatctactcgggccatgaccaccccggtgagggtgagcat aaaattgttgaatttatccgtcggaggaagatgcagccggactacggtccgaacgaaacg cactgcatgtacggacttgatgcagatctcgtcatgctagcgctcgctactcacgagcct cattttgtgctgttgcgtgaggtggtgacctttgggtttggccaggaatcgcggcgggca cgtgaacagcgtgagcaggacgaatcagacggcattgtggctgacaagtcttatcagaag cctgacgagtttgttttgtttcatgtgaatgtcttgcgtgattatctcgaccttgaggtt cgcgagaggcttggtgacaagctcccgaccaactacgacctagagcgagttgtagacgac ttcgtgctcatgtgcttttttatcggtaatgattttctaccgagtatcccaacgcttggt atccacgatggaagtttggtgcaaatgcttgacctttacgcgcagcgggtgctgttggcc cacacgtacctaaccgacatgggacgcattgactggcgagccgtggaggggtggctgcag gggcttgccgacctagaattcaccacaattaaagctcgagaggcgcaggaacaggagtat cagcgaagaatggcacaacaatgtggcgaacaccgggctgccacaatatcaacgtcgact gtggagtcgttaagggagtacaaagaccgttactaccgagacaagcatcagtttgccatg gggtgggatccacaaggggaagatatggccaaactaagactacactacattgagggcatc atgtgggttattggctactactaccaggggccgccatcgtggaagtggtactttccacac cactacgcgccaatggccagcgatctggttaatcttcccgctgtggcggcttgtgttaaa tttgatcccggtaaaccttttcttccccaccaacagttgctcgcggttttgccgcctatg tcgtaccgctctatgccccgtgcctattggccgttactacgaagcaaaaacagtcctctg gccaggtattttccagaaaagcttcaaatcgatcgagagggcacacgcgcaccctgggag ggtgtagtgttgattcccttcatcgaagaacggacgttgcttgccgcgtatgaaaccgtg caagatcgagtaacgccggaggaacgtaagaacaaccgcctaggtctaccaaccctctat gcctacgatcccactattgaagcctacgaggtgccaaactcgttatttgggcccctgaga agaaccaccgttcgccgtgacgctttcgacttcccccccttgacaaagtttattccgcgg ctctgcacaggcgtgtgcactggtgagcaacagtttgaagggttcacgacacttcggtcg aagtggcgttacatcaccccacaacgtgagagcggtgttgtgactatcttcggcatgccc gcacgcggtgagagcttgctcctagggttgaaggacagcttcaacgctattgccgcccat gaggtcgcaacgcttgttgggcaggaagttcttgttggattcccgcactaccgccgcgca cgtgtggtagcggttagcgacaaacgtgtgcacatcagcgccaatataaatctagagggt gtttcgtgtggtgccaacgtacgggaactaaaccgggacgcttcaatgaatatagcgaag gaattggaaacacatcgacagtgtatgcgggagaagctcggaatgtctgtaagcaacctg acagtactcgtgtatgttaacctttttactggaatgcgcatgacccgaaaggggcgtgtg gtgcgcaacttttccaaggaccaaacatgctatgcattgccccttgtagcgcgcttgcaa gacgtgaaattaacggaagactctcgctacgttgagagggatcgtgtggaatgggataac cgctttggttccagagtcatactggttggagctgagccaaaaagtatgaaggggaaggat cagcagctatatggtagttctggtgttgtggttagatccagccctgatgctgaggggacg tttactgtcgctgcacgggtgtttcaaaagccagtttctattccgcacgtgctgcttgac tatgcttcgtctcgcaattgggtatcaatgccagatgtgagcaatgaggtccgtgttggt cccttggctctaaagcatcttgtaggttctgtacgcacatcccctcagtacggttgccgt gagattgggctcggcctcatttacacgcggaataacctcgttcgcatcggttacgcgaaa caaacggtgcgtggtggcaaagcatggggagcccccggtggcaggttgggtgcggggctg gaaaatagtgacgatgcatttggcaggccagtccaagatgctgcgccggcgggtcactac ttggaaagcctgcaaaagggcgagtctcgtccccgatcttcccgtcccatgcagtacatg acatggttctcgcggaaagccgttgtcttaatcaaaacgtacgtggagaggttcaaacca cttgttgaccgactggaaagcattgcctcttcaccccaagctctggatcccccgcagttc atgacgggcgagtgggctgataacgacgtggacgacgttcttcgttcgatcgaagagttt atcgaatcgtgtggcatacaaagcgtcccccttgttgctgcccaagatgacgcttttcca cgagaacacgtgcgaatgttggaagaagagctggaccgtcaagggccacggccgttggag gacagaatgctgagctcggtggcgcggcggtgtctctactttcctgtcacaagatgtgct ggtggacacatttcccaattacctcttccccaggagcagacagttcaccttggctcccgc gttgtgaactgccgtgcctgtggtgcagcacctttcggtgcaactggtaccgttgttcgt ttgctatcaactggccacgacgcggaagttgtgtatgatgaccctttcgttggtggaagt tactttgacggcaggctgcgtcagcctcgtggttcgatatcgaaattgtcaacactcctc gttttgaataaaccttcgggtgacgaatctgagtcgtcacaaggacaaaatgggtccgtt gtccaaaatttaaagagtatctgcaagaagttgcagcaaaaggaggacgatcacgatcaa caacagcaacatgggcgtggggtgggaattccatccacggaaggtaccccaagcatcccg aagccacgtagcgccatgggggagacaagtgcttctggtatcgcagctggacggaacgtc gtgtcaccttcatctctaacggtaagtggtggttctggcggcattcaagtagcagaactt atggggaaattggcatcgtcgaaggcgacttcaccagatgcagggctgaatatttgtggt gcaacatatgctccaactgtcgctagcaataaactgccggtggctcctcgctcagtaacc accacggcagcccccggctccgggaccttctccgttccactaccgcgtacaagtggcaac gcaaacaggacaaacagcggcgatggcgaaggtgataaaggttgcaggaagcctggtttc tcttttactgttccgtcggaggttttgaacggtgaattccaaattcgccctggtgaaggg gctttgcttctgaagcgcatgatttctcagcatttatcaggagacaggaaacgatga

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