Theobroma cacao (cacao): 18586632
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Entry
18586632 CDS
T02994
Name
(RefSeq) RNA polymerase II subunit A C-terminal domain phosphatase SSU72
KO
K15544
RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:
3.1.3.16
]
Organism
tcc
Theobroma cacao (cacao)
Pathway
tcc03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tcc00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
18586632
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tcc03021
]
18586632
03019 Messenger RNA biogenesis [BR:
tcc03019
]
18586632
Enzymes [BR:
tcc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.3 Phosphoric-monoester hydrolases
3.1.3.16 protein-serine/threonine phosphatase
18586632
Transcription machinery [BR:
tcc03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
18586632
Messenger RNA biogenesis [BR:
tcc03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
18586632
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ssu72
Motif
Other DBs
NCBI-GeneID:
18586632
NCBI-ProteinID:
XP_007010184
LinkDB
All DBs
Position
10:7169825..7173554
Genome browser
AA seq
193 aa
AA seq
DB search
MKFRYAMVCSSNQNRSMEAHSLLKKQGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKH
MLDDLRRKDPELYKRNGILPMLKRNSSVKLAPQRWQDNAADGTFNIVFTFEEKVFDMVIE
DLHNRDQVLLKSVLVINLEVKDNHEEAAIGARLALDLCEQIEAAESWEESIDDILASFEN
KHRRKLLYSISFY
NT seq
582 nt
NT seq
+upstream
nt +downstream
nt
atgaaattccggtacgccatggtttgttcatcgaaccagaaccggagcatggaggcccac
tcgctcctgaagaagcaggggttcgacgtctcctcctacggaacgggggctcacgtcaaa
cttcctggaccctcccttagagaacccaacgtctacgagtttgggaccccttacaagcac
atgctggatgacctccgccgtaaagaccccgagctgtacaagcgtaatggcatattgccg
atgcttaaaaggaactcaagtgtgaaattggcaccgcaacgttggcaagacaatgctgct
gatggtacctttaacattgttttcacctttgaagagaaggtgtttgatatggtcattgaa
gatctgcacaaccgggatcaagttctcttgaaaagtgtgctggtgatcaacttagaggtc
aaagataaccatgaggaagcagccataggagcccgtctagctttagatctttgtgagcag
attgaagctgctgagtcatgggaggaatcaattgatgatattctggcttcttttgagaac
aagcatcggcggaagctactgtatagcatctctttctactga
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