Theobroma cacao (cacao): 18607089
Help
Entry
18607089 CDS
T02994
Name
(RefSeq) 30-kDa cleavage and polyadenylation specificity factor 30
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
tcc
Theobroma cacao (cacao)
Pathway
tcc03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tcc00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
18607089
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tcc03021
]
18607089
03019 Messenger RNA biogenesis [BR:
tcc03019
]
18607089
Transcription machinery [BR:
tcc03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
18607089
Messenger RNA biogenesis [BR:
tcc03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
18607089
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YTH
zf_CCCH_4
zf-CCCH
zf-CCCH_2
Torus
zf-CCCH_3
Motif
Other DBs
NCBI-GeneID:
18607089
NCBI-ProteinID:
XP_007041140
LinkDB
All DBs
Position
2:744189..749805
Genome browser
AA seq
698 aa
AA seq
DB search
MDDSEGGLSFDFEGGLDAGPAAPTASMPVVNSDPSAAANNNSNNNSAVPGAAPTSTNDPA
AAVGGGGAGRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPVCRFFRLFGECREQDC
VYKHTNEDIKECNMYKLGFCPNGADCRYRHAKLPGPPPPVEEVLQKIQQLSSYNYNKFFQ
QRNSGFAQQTEKSQIPQGQNNVNQGAGGKPSTTESANMHPQQQVQQPPQQVSQTQIQNVP
NGQSNQANKTAIPLPQGISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAFDSAEN
VILIFSVNRTRHFQGCAKMTSKIGGSVAGGNWKYAHGTAHYGRNFSVKWLKLCELSFHKT
RHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDSELMAISVAAELKREEEKAKG
VNSDNGGENPDIVPFEDNEEEEEEESEEEDESFSAAAQGRGRGRGVMWPPHMPLARGARP
MPGMRGFPPMMMGGDGFSYGPVTPDGFGVPDLFGAPRPFPPYGPRFSGDFTGPASGMMFP
GRPPQPGAMFPAGGLGMMMGPGRAPFMGGMGPTGANPVRGGRPVSMPPMFPPPPAPSSQN
SGRAVKRDQRTPTNDRYGAGSEQGRGQEMAGPGGRLDDETQYQQEGQKAHHEDQFAAGNS
FRNDESESEDEAPRRSRYGEGKKKRRSLEGDDANGSDH
NT seq
2097 nt
NT seq
+upstream
nt +downstream
nt
atggatgactcggagggaggtctcagcttcgatttcgagggcggtctcgatgcgggtccc
gccgcgccaactgcctccatgcccgttgtcaactccgatccttcggccgccgccaacaac
aacagcaacaacaactcggcggtcccaggcgctgcccctacttcgacaaatgatcccgcc
gccgctgtgggtggcggaggagctgggcgaaggagctttcgtcagactgtatgccggcac
tggctccgcagcctctgcatgaagggcgacgcctgcggtttccttcaccagtacgacaag
tcccgcatgccggtctgccggttttttcggctttttggtgagtgccgggagcaagattgt
gtctacaaacacaccaacgaggatattaaggagtgtaacatgtacaagctaggtttttgt
cctaatggtgctgactgccgatataggcatgcaaagctcccaggacctccacctcctgtg
gaagaagtcctgcaaaagattcagcaattgagttcttacaattataacaaattttttcaa
caaaggaattctggctttgcccaacaaacagaaaaatctcagattccacaaggacaaaac
aatgtaaaccaaggagcaggtggaaaaccttcaacaacagaatctgctaacatgcatcca
cagcagcaagttcaacagcctccacaacaggtcagccagacccagatacaaaatgtcccc
aacggtcagtctaaccaggcaaacaaaactgctatacctttgcctcaaggaatatctagg
tattttattgttaaaagttgcaaccgcgaaaatctggaactatctgttcaacaaggagta
tgggcaactcaaagaagcaatgaggctaaactgaatgaagcttttgattctgctgaaaat
gtgattttgatcttctcagttaatcgtactcggcatttccagggttgtgccaagatgaca
tcaaaaattggtggatctgttgctggagggaactggaaatatgctcatggaactgcacat
tatggacgaaatttctcagtaaaatggttaaaattatgtgagctgtccttccacaaaact
cgccatttgaggaacccctacaatgagaacttaccagtaaagataagtagagattgtcag
gagttagagccttctattggtgagcagttggcctccttgctttatcttgagccagatagt
gagcttatggctatttcggtggcagcagaattaaaacgagaagaagagaaagcaaaggga
gtcaattcagataatggaggagagaacccggacattgtgccatttgaggacaacgaagaa
gaagaagaggaagaaagtgaggaggaggatgaaagctttagtgctgcagctcagggaaga
ggaagaggcagaggagtcatgtggccccctcacatgccacttgcccgaggtgccagaccc
atgcctggtatgcgaggttttccacctatgatgatgggtggtgatggcttttcgtatgga
cccgtaacacctgatggttttggggtgccagatcttttcggtgctccccgtccttttcca
ccatatgggccaaggttttctggagatttcacaggtcctgcatctggcatgatgtttcca
gggcgacctccacaacctggggctatgtttcctgctggtggacttgggatgatgatgggt
ccaggtcgtgctccatttatggggggtatggggcccacaggtgcaaatcctgttcgaggt
ggccgcccagtcagcatgccccctatgtttcccccacccccagcaccttcatcccagaat
tctggccgggcagttaagagagatcagaggacaccaaccaatgacagatatggtgcagga
tcagagcagggtagaggtcaggaaatggctggtccgggaggcaggttggatgatgagaca
cagtatcagcaagaaggacaaaaggctcaccacgaagatcagtttgctgctggaaacagc
ttcagaaatgatgagagtgaaagtgaggatgaggcaccgaggaggtcaaggtatggcgaa
gggaagaagaaaagaagaagcttagaaggagatgatgccaatggttctgatcactag
DBGET
integrated database retrieval system
