Thiomicrospira cyclica: Thicy_0358
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Entry
Thicy_0358 CDS
T01517
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
tcy
Thiomicrospira cyclica
Brite
KEGG Orthology (KO) [BR:
tcy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
tcy03016
]
Thicy_0358
Enzymes [BR:
tcy01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
Thicy_0358
Transfer RNA biogenesis [BR:
tcy03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
Thicy_0358
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
Motif
Other DBs
NCBI-ProteinID:
AEG31134
UniProt:
F6DAP1
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All DBs
Position
complement(498113..499279)
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AA seq
388 aa
AA seq
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MNFQLITDDQGLNSLCNQLQQHKWLAVDTEFMRQDTFFAQLAMVQIATPTLDVYLIDPLS
ISNLDNLWALLANQTILKVFHAARQDLEVLYQQADRMPSPIFDTQLAGVFLGLGDQVGYA
RLVEELCQEKLNKDQARTPWLDRPLNPEQLAYAAADVWFLAQAYPKIIRQLSPTQRQALE
ADFDAISNPELYRINPDQAWLRIKFSSGLSPKQSALLKHITAWRETQAVSSNQPRKWIIS
DDAILQLAKRPVREVQDLYKLNQFDGELIRHHGESLIQIVDNTLQNPDTWPSLAPQKPLT
SEQQTLLAILQAISQQVAQEQGIHLPNLANKQELTALLLNQPSQLNQGWRYLILGKMLQQ
FMQGQLHLRIDNKTQPLHPKLLLTNPNP
NT seq
1167 nt
NT seq
+upstream
nt +downstream
nt
atgaatttccagctcattactgatgaccaaggccttaatagcctttgcaaccaactacaa
cagcacaaatggcttgctgtggataccgagtttatgcgtcaagatactttttttgcgcag
ctggcgatggtacaaattgccactcccactcttgatgtttacttaattgatcctttatcg
attagtaatttagacaatctatgggcactgttggccaatcaaaccattctgaaagttttc
catgccgcgcgccaagatcttgaagtgttatatcaacaagctgatcggatgccatcaccc
attttcgatacccagctcgctggtgtttttttaggtcttggtgatcaagtaggctatgca
cgactcgttgaagagctctgccaagaaaaactgaacaaggaccaggccagaacaccctgg
ttagaccgtcccctaaacccagaacaattagcctatgcggcggcagatgtttggtttttg
gcacaagcctatcccaaaattattcggcaactctcacccactcagcgtcaagccctagaa
gccgactttgatgcgataagcaaccccgaactctatcggattaacccggatcaagcctgg
ttacgcattaaattttcgtccggtttatcaccgaaacaaagtgccttactaaaacacata
actgcttggcgggaaacgcaagccgtatcgagcaatcaaccacgcaaatggattatctct
gatgatgcgattctccagttggccaagcgccccgttcgcgaagtacaggatctgtataaa
ttgaaccaatttgatggtgagctgatccgtcaccatggtgaaagccttatccaaattgtc
gataacactcttcaaaacccagacacctggccaagccttgcacctcaaaaacctttaaca
tcagaacaacaaaccctactggctattttgcaggccattagtcaacaggtcgcgcaagag
caagggattcatctacccaacctggccaataaacaggaattaaccgcgctgttgctaaac
caaccctcacaactgaatcagggctggcggtatttaatacttgggaaaatgcttcagcaa
tttatgcaagggcagctccatttacgaattgataataaaactcagccccttcaccctaaa
cttctattaaccaaccctaatccataa
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