Tenacibaculum todarodis: LPB136_09700
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Entry
LPB136_09700 CDS
T04588
Name
(GenBank) RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
ten
Tenacibaculum todarodis
Pathway
ten03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ten00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LPB136_09700
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ten03019
]
LPB136_09700
Enzymes [BR:
ten01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LPB136_09700
Messenger RNA biogenesis [BR:
ten03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LPB136_09700
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
LED_rpt
AAA_22
Flavi_DEAD
AAA_30
UvrD-helicase
Motif
Other DBs
NCBI-ProteinID:
APG65621
UniProt:
A0A1L3JKH5
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Position
2137638..2138870
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AA seq
410 aa
AA seq
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MQFSDLPLHETILRAIAQENYRTATPVQEKAIPLVLAKKDVIVSAQTGSGKTAAFALPII
QMLLDGQNSEKKKKRIKALVVSPTRELALQIEENFKNYSKFTDLKTTTVYGGVSLNPQKE
ALKEGVDILIATPGRLIDLHMQEQVDLRSLKMFVLDEADLMLDMGFINDVKKIESYCPQK
KQTLLFSATMPEKIVALANRTLINPEKVEINPENTTAKTIGQLLYRLPKKNKTDLCLHLL
RNTINGKILIFRRTKFGVDKLEQTLLKNDYKVGSIHGDKSQILRNQAIEDFKNKKTHILV
ATDVAARGIDISKIDAVLNFDIPNVPETYVHRIGRTGRAGKSGIAFSFCSPDEDAYINLI
EELLGRPIKQVDDHPYPLVQPKNKKPSNTISKHKKSRKSANSKKNKKRWY
NT seq
1233 nt
NT seq
+upstream
nt +downstream
nt
atgcagttttctgatttacctttacacgaaaccatcttaagagcaattgctcaagaaaat
tacagaacagcaacacctgttcaagaaaaggcaattccgttagtattggctaaaaaagat
gtaattgtttctgcacaaacaggttctggtaaaactgctgcatttgcgttgcctattatt
caaatgttattagacgggcaaaattcagaaaaaaagaaaaagagaattaaagccttagta
gtaagtccaacaagggaattagcgttacaaatagaggaaaattttaaaaactacagcaaa
tttacggacttaaaaactaccactgtttatggtggcgtttctttaaatccgcaaaaagaa
gctttaaaagaaggtgtagatattttaattgcaactccaggtaggctaatcgatttacac
atgcaagagcaagtagatttacgttctctaaaaatgtttgttttagatgaagccgattta
atgttagacatgggtttcattaatgatgttaaaaaaattgaaagctactgtcctcaaaaa
aagcaaactttattattttctgcaaccatgccagagaaaattgtagcactggcaaacaga
acattaattaatcctgaaaaagtagaaattaatcctgagaatacaaccgcaaaaactata
ggtcagttattgtatcgtcttccaaagaaaaacaaaaccgatttgtgtttacacttatta
agaaacactataaacgggaaaatattaatttttagacgtactaaatttggtgtagataag
ttagagcaaaccttattaaaaaacgattataaagttggaagtattcatggagataaatcg
caaatattgcgtaatcaagcaattgaagacttcaaaaacaaaaaaacacatattttagta
gctacagatgttgctgctcgtggaattgacatcagtaaaattgacgctgttttaaatttt
gatattccaaatgtacctgaaacctatgttcacagaattggtagaacaggacgtgcagga
aaatctggaattgctttttcattctgtagtccagatgaagatgcatacatcaaccttatt
gaagaattattaggtagaccaataaaacaagtagacgatcatccctatccattagtacaa
ccaaagaacaaaaaaccgagtaatacgatcagtaaacataagaaaagtagaaaatctgct
aattctaaaaagaataaaaaacgctggtattaa
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