Thermanaerosceptrum fracticalcis: BR63_17965
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Entry
BR63_17965 CDS
T06762
Name
(GenBank) DNA polymerase domain-containing protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
tfr
Thermanaerosceptrum fracticalcis
Pathway
tfr03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
tfr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
BR63_17965
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tfr03400
]
BR63_17965
Enzymes [BR:
tfr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
BR63_17965
DNA repair and recombination proteins [BR:
tfr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
BR63_17965
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
QNB47979
UniProt:
A0A7G6E7C5
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All DBs
Position
3553785..3554699
Genome browser
AA seq
304 aa
AA seq
DB search
MESMQITIEGKELTISNPHKILWPESGITKLDYIHYLISVSPYLLAYTQNRLLTMIRFPD
GIDGKSFYQKEIPPFAPEWMERAFYSDKNWILLNDIATLVWVANLASLEIHVPFDQYVKP
DYPTELTLDLDPMDTDNFDLVREIALKSREVIDSLGLFSVIKTSGATGLQVYIPIEPRYT
YEEARLINTFIARYIAEKNPRKVTLERMVKKRGKHLYFDYLQLWRGRTLPAPYSVRAKPG
ATVSTPLEWAEVEKEITPADFTIRTVPERLKLKGDLFRFVTTEKMNQGLDEILVFIKGAE
LTRV
NT seq
915 nt
NT seq
+upstream
nt +downstream
nt
atggagagcatgcaaatcactatcgagggcaaagaactcactatttccaaccctcataag
atcttgtggccggaatcgggtatcacgaaactcgattacattcattatttaataagtgtc
tctccctatcttttggcctatacacaaaaccgcctcttgaccatgatcagatttcctgac
ggtattgatggtaaatccttttatcagaaagagattcccccttttgccccggaatggatg
gagcgagccttttattctgataagaactggatactcttaaacgacatcgctaccctggtc
tgggtggccaacctggcttctctggaaatacacgtccccttcgaccagtatgttaaaccc
gactatcccacagagcttaccctggacctggaccctatggatacggataattttgacctg
gtgagagaaatagccctcaaatccagggaagttatcgattccctgggcctctttagcgtc
attaagacctccggggccactggtcttcaggtctatatacctattgagcccaggtatact
tatgaggaagcccggctcatcaatacctttattgcccgttacatagcggaaaaaaatccc
cgcaaggtcacccttgaacggatggtgaagaagcgggggaaacatctctattttgattat
ctccagttgtggcggggtagaaccttgccggcaccttattccgtaagggcaaaacccggg
gctacggtttctactcccctggagtgggcggaggtggaaaaggaaatcactccggcggac
tttactatacggacagtaccggaaaggctgaaattgaaaggagaccttttccgctttgta
actacggaaaaaatgaaccagggcctggatgaaatcctggtttttatcaagggggcagaa
ctaacgagggtataa
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