KEGG   Thermococcus gammatolerans: TGAM_1718Help
Entry
TGAM_1718         CDS       T00920                                 

Gene name
lig
Definition
(GenBank) ATP-dependent DNA ligase (lig)
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
tga  Thermococcus gammatolerans
Pathway
tga03030  DNA replication
tga03410  Base excision repair
tga03420  Nucleotide excision repair
tga03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:tga00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    TGAM_1718 (lig)
   03410 Base excision repair
    TGAM_1718 (lig)
   03420 Nucleotide excision repair
    TGAM_1718 (lig)
   03430 Mismatch repair
    TGAM_1718 (lig)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:tga03032]
    TGAM_1718 (lig)
   03400 DNA repair and recombination proteins [BR:tga03400]
    TGAM_1718 (lig)
Enzymes [BR:tga01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     TGAM_1718 (lig)
    6.5.1.6  DNA ligase (ATP or NAD+)
     TGAM_1718 (lig)
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     TGAM_1718 (lig)
DNA replication proteins [BR:tga03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    TGAM_1718 (lig)
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     TGAM_1718 (lig)
DNA repair and recombination proteins [BR:tga03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     TGAM_1718 (lig)
   NER (nucleotide excision repair)
    Other NER factors
     TGAM_1718 (lig)
   MMR (mismatch exicision repair)
    Other MMR factors
     TGAM_1718 (lig)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase DNA_ligase_OB_2 TPR_1 Corona_NS1
Motif
Other DBs
NCBI-ProteinID: ACS34220
UniProt: C5A7K8
LinkDB All DBs
Position
1623263..1624942
Genome map
AA seq 559 aa AA seqDB search
MRYSELAELYRRLEKTTLKTLKTKFVADFLKKTPDDLLEIVPYLILGKVFPDWDERELGV
GEKLLIKAVSMATGVPEKEIENSIKDTGDLGESVALALKKRRQKSFFSQPLTIKRVYNTF
VKVAEASGEGSQDRKMKYLANLFMDAGPEEGKYIARTVLGTMRTGVAEGILRDAIAEAFK
VKVELVERAYMLTSDFGYVAKIAKLEGNEGLSKVSIQIGKPIRPMLAQNAASVKDALIEM
GGEAAFEIKYDGARVQVHRDGDKVIIYSRRLENVTRSIPEIVEAVKASLKPSKVIVEGEL
VAVGENGRPRPFQYVLRRFRRKYNIEEMIEKIPLELNLFDILYVNGESLIDTKFTERRKR
LEESVEESDKIKLAEQLVTKKVDEAEEFYKRALELGHEGLMAKRLDAIYEPGNRGKKWLK
IKPTMENLDLVIIGAEWGEGRRAHLLGSFLVGAYDPESGEFVPVGKVGSGFTDEDLVEFT
KMLKPLIIREEGKFVEIEPKVVIEVTYQEIQKSPKYKSGFALRFPRYVALREDKSPEEAD
TIERVAQLYELQERFKAKR
NT seq 1680 nt NT seq  +upstreamnt  +downstreamnt
atgaggtactccgagttagccgaactttacaggaggcttgagaagaccacgctcaaaacg
ctcaagacgaagtttgtggcggacttcctcaagaaaacgcccgacgatttgctcgagata
gtgccctacctgattctcggcaaggtcttcccagactgggacgagcgcgagctcggcgtc
ggagaaaaactcctgataaaggccgtttcgatggcaacgggtgtccccgagaaggaaatc
gagaactcgattaaagataccggcgacttgggcgagagcgtggctttagccctcaagaag
agaaggcagaagagcttcttcagccagcccctcacgataaagcgcgtctacaacaccttc
gttaaggttgccgaggcgagcggagaggggagccaggacaggaagatgaaatatctggcc
aatctcttcatggacgccgggcctgaggagggaaagtacatagcgaggacagtcctcgga
actatgaggaccggggttgccgagggaatcctgcgcgatgccatagccgaggcctttaag
gtaaaggttgagcttgttgagagagcttatatgctaacgagcgacttcggctacgtggcg
aagatagcgaagcttgaagggaacgaggggctctcgaaggtgagcatacagatcgggaag
ccgataaggcccatgttggcacaaaacgccgcgagcgttaaggacgcactcattgagatg
ggcggtgaagccgccttcgagataaagtacgacggagcgagggttcaggtccaccgcgac
ggggataaggtgataatctactcgaggaggcttgagaacgtcacccgctcgattccagag
atagtcgaggcggtaaaggcctcgctgaagccttctaaggtcatagtagagggtgagctg
gttgccgttggcgagaacggtcgtccgagacccttccagtacgtcctgaggaggttcagg
aggaagtacaacatcgaggagatgattgagaagatcccgctcgagctcaacctctttgat
attctctacgtcaacggcgaaagtctcatcgacacgaagttcaccgagaggcggaagagg
ctcgaggagagcgtcgaggagagcgataagataaagctcgccgaacagctcgttacgaag
aaggtcgacgaagccgaggagttctacaagagggccctggagcttggccacgaggggctc
atggcaaagaggcttgacgcgatctacgagcccggaaatcgcggaaagaaatggctcaag
atcaagcccacgatggagaacctcgatttggtcatcatcggcgccgagtggggcgaggga
aggcgcgcacacctgctcggttccttcctcgtcggtgcgtacgacccggagagcggtgag
ttcgtcccggttgggaaggtcgggagcggtttcaccgacgaggatctggtagagttcacc
aagatgctcaagcccctcatcatccgcgaggagggcaagttcgtcgagattgagccaaag
gtggtcatagaggttacctaccaggagatacagaagagtccgaagtataagagcggtttc
gcgttaaggttcccgcgctacgtggcgttgagggaagataaaagtccggaggaggcggac
acgatagagagagtcgcccagctctacgagctccaggagaggttcaaggcgaaaaggtaa

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