Toxoplasma gondii: TGME49_259560
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Entry
TGME49_259560 CDS
T01093
Name
(RefSeq) endonuclease/exonuclease/phosphatase family protein
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
tgo
Toxoplasma gondii
Pathway
tgo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tgo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TGME49_259560
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tgo03019
]
TGME49_259560
Enzymes [BR:
tgo01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
TGME49_259560
Messenger RNA biogenesis [BR:
tgo03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
TGME49_259560
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
TGME49_259560
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
PDE12-like_N
Motif
Other DBs
NCBI-GeneID:
7899003
NCBI-ProteinID:
XP_002365150
UniProt:
S8F7D0
LinkDB
All DBs
Position
VIIb:join(2768739..2772020,2772344..2773221,2773705..2773942,2774079..2774258,2774740..2774838)
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AA seq
1558 aa
AA seq
DB search
MTASAFLPVLQRPCVTLVQQPPHTSSSSFVSSSMDGSPARAPIANSASHPLSHSGSIEDS
SVTGDLPQGSARQSRESDADGPGSGLPHSRRSLSDQSFCPRRIFAPAVTEPAHTSSGDPR
CASDSRDSHLPQHVLPGLADPSSIRIFSGPRGSEDPSLATAAHACTENSPAPDPCSAVHM
PASQEAESCSTPASAGCLTPPISVEGPSPGDMADVDTDSSGFRVAAAATSGAIRACSDAD
SGCAAIKVAPWGSSSEATECSGISGAPGNSKSLDSRECSQEGGTGGRTGDGPTGKGAGAN
RVYARDHGKKDAASSQAGGTAPATSASPPGGSAPVSGREPSGGAELLRCDLMWIASGNRG
GLITPVEGCELHPIVIIRDRQGRVFDDDEESEENPIGKSSQIFFRWMRGPPRAVCTFHPQ
RTACLQCVVTLRCFCCYDCFRKGYKQLHKFYRTRGLSSILPHPNSHTYGVPCLPFDWNDF
DSNRQFDTQHLALLKQAGLVTADGEEESWQPVSTSRNYTPSKADVGHQLRLETLVVDRET
LVQLIESSRSQSTRRKSRERREFAGAADKDEGKDGVTVAKDQAGFDSTERQRGAPSSFPD
SDQPTQGRNHSPDADGTDGASQHESARRPSTGSVSGDGPPSRRAWTEEKSVAACDQPTSL
LKNTEASTAESSAGHEATTSNASARTNSSGAAASVNGGASQDANRFPPQEACCIVLGDQE
SVDMAEAAAVAWAAASLQDSSHYRQVLTGCCVPTVDTVARRRRRLASVPHIPPVHGVGPL
QPHGLGHTAASDDPGVPHGLSDLSLHRQGLPGTHEVRGVPDGNMHVPPSGHLDAFAGAET
RGRAANHLFSPIDDMGAAAYGPVNGGRGATLSDGSLPGSVAFASSGGADPSYSSSSSFGD
ASSFAYGLGRSASGLCTYGPGGAGSGAATVISSYEATAKMSGPGFYQNETGISSGGPLVS
RDGAGTLGGESDGPQHFAHSGSGEFDDSHSDCGLSSNGSYGSSPAESPRASGSRSSSRCE
KNSRHSGDSAGADLGPDDPEQFNVSVMTWNVLAELYGTLDAFPHCDPYMLAWPYRRQRIL
EEILAHNPDVVCLQEVQSEHFEDFFLPELARYGYNGTYKQKTMEVFTSGSGKKSGGKFTM
DGCATFYRKSKFTIVDQCGLEFSQLIKQASREQLPRQLQRQAVRRLLKDNVALLLLLEVK
NEGDARAAAAAEEAERGRNTETRRCDVNRSSSDSRALSASATTRSRHASTETSSPNSTDP
VSRGREQQATGAGVASGGGGTLGSNRAESENPRGSRASGLDKDAEPVRSKLRANAPAWGE
TSRLFFDTLASTHGRAGGAPWGYAAGYTSADGNPSAHRKLLLVANTHIVANPESNDVKIW
QAQTLVGMIEKYLLAFRPPAYRDSPCLTPAVVLCGDFNSTPDSAVYQLLVTGRCDRHHID
LASDRHGLLAELNLGHSIPLKSGYAVSKALKDGLDPHDFYALRQSEPEFTNYTGNYTGCL
DYLFFCDTMLRVREILEPIDSKQLLREARQLQLLHQALPSPLRPSDHIPLLCKFEWIQ
NT seq
4677 nt
NT seq
+upstream
nt +downstream
nt
atgactgcgtccgcttttctacccgttcttcagcgcccttgtgtcactcttgtgcagcag
cctcctcatacgtcttctagctctttcgtgtcttcttctatggatgggtcacccgctcgt
gcgcccattgcaaacagtgcttctcacccgctgtcgcattctgggtccatcgaggattct
tcagtcacgggggacttgccgcaaggttccgctcgtcagtcgagagagagcgatgcggat
ggccctggaagtggcctcccgcactcgagaaggtctctgtctgatcagtctttttgtccg
cgtcgtatcttcgctcccgctgtcactgaacctgcacacacttcgtctggagaccctcgc
tgcgcgagtgactcgagggactcgcatcttccgcaacacgttctgcccgggttagcagat
ccgtcctcaatccggattttttctggccctagaggcagtgaagatccaagtttagcgaca
gcggcacacgcatgtacggagaattcccctgctccggacccttgcagcgctgtacacatg
cctgcgtcacaggaagcggagtcttgttccacgccagcctctgcgggttgcttgacacct
ccgatttcggtggaaggcccatctccaggagatatggcggatgtagacaccgacagtagc
ggctttcgagtagctgcagctgcgacatctggggcgatacgcgcatgcagtgatgcggat
agcggatgcgctgcaatcaaagttgcgccttggggatctagcagcgaggcgacagagtgt
tcggggatttcgggtgctccaggaaacagtaagtcactggactccagagaatgcagccaa
gaagggggaacggggggtcgaaccggcgacgggccgacaggcaaaggcgcaggagcaaac
cgagtttacgcgagagatcacgggaagaaggatgcagcatcttcgcaggcaggtggcacg
gcaccggcgacttcagcctccccgcccggggggtcagctcccgtatcggggcgcgagcct
tcgggtggagcagagttgctgcggtgtgatttgatgtggattgcctccgggaacagagga
ggactcatcacacctgtggagggctgtgagcttcacccgattgtgattattcgcgaccga
caaggcagggtgtttgatgatgacgaggaaagtgaagagaatccgatcgggaagtcgtcc
caaattttctttcgctggatgcgaggtccccctcgggctgtttgtacattccacccgcag
cgcacagcttgcctgcagtgcgttgtgacactccgttgtttctgctgctatgactgcttc
cggaaggggtacaagcagctgcacaaattctatcggacgcgaggtctgtcctcaatcctc
ccccaccccaattcccacacctacggtgttccgtgcctcccgtttgactggaatgacttc
gactcgaatcgccagttcgacacgcagcatctggcccttctgaagcaagcgggactcgtc
acggcagacggtgaggaggagagctggcagccggtctccaccagtcgcaactacacacca
tcgaaggctgacgttggccatcaattacgacttgaaacgctggttgttgatcgggaaacc
ctggtccagctcattgaaagcagtcgatcacagagcacccggcgaaaaagccgcgagaga
agggaattcgccggcgccgcggataaagacgaaggcaaggatggtgttacggtagcgaaa
gaccaggctggttttgattccacggagcgacagagaggcgccccatccagctttccagac
agcgatcagccgactcaaggcaggaaccacagtccagacgctgacggaactgacggagca
tcacaacacgaaagtgccaggcggccgtcaactgggtctgtttccggtgacggtcctcca
tcgagacgagcatggacagaggaaaagtcggtagctgcttgtgatcaaccaacttcactt
ctcaagaatacagaggcgtccactgcagagtcttctgccggccacgaagcaacaaccagc
aacgccagcgcccgtacgaacagcagtggagctgcggcctcggtgaacggaggcgccagt
caggatgcaaacaggttcccaccccaagaagcatgttgcattgtcctgggagatcaggaa
tccgtggatatggcagaagcagctgcggtcgcgtgggcagctgcctcacttcaagactca
agtcattatcgccaggtcttgactggctgttgtgtcccgactgtcgatacagtcgcgcgc
cgtaggcgacggctggcttcagtccctcacattccacctgtccacggggttgggcctctc
cagccccatggcttaggccatactgcggcgtctgacgaccctggcgttccacacgggctc
agcgatctgtctctccaccgtcaaggcctccccggcacccacgaagttcgtggagtcccc
gatgggaacatgcacgtgccaccctctggtcatcttgacgcgttcgcgggcgccgagaca
agaggtagagcagcaaatcacctcttctctcccatcgacgacatgggcgccgcagcctac
ggcccagtaaacggcggacgaggggcgacgctgagtgacgggtctctacctggaagcgtc
gcctttgcgtcaagtggaggcgcagacccttcctactcgagttccagctcgttcggggat
gcttccagtttcgcctatggtctcgggaggtctgccagcggtctgtgcacctacggcccg
gggggggcgggaagtggcgctgcaactgtgatttcgtcttacgaagccactgcaaagatg
agcggccccggattctatcagaacgagacaggcatcagcagtggcggccccctagtgagt
cgggacggtgccgggaccctaggtggcgagagcgacggcccccagcactttgcacatagt
ggcagcggcgaattcgacgactcgcacagcgactgcggcctaagttccaacggaagctac
gggagcagccctgccgagagtcctcgagctagtggaagccgctccagtagtcgctgtgaa
aaaaacagccgacacagcggcgattccgctggcgccgacctgggtcccgatgatccggaa
caattcaacgttagcgtcatgacgtggaacgtccttgctgaactgtatgggacgctcgac
gccttcccccattgcgacccctacatgctcgcgtggccctacaggcgacaacgcattctg
gaagagatcctcgctcataatccagacgtcgtctgtcttcaggaggtccaaagtgaacac
ttcgaggacttcttcttgcccgagctggctcgctacgggtacaacgggacgtacaagcag
aagactatggaggttttcacgagtggaagtgggaagaaaagcggaggcaagttcacgatg
gacggctgcgccacgttttaccggaagtccaagttcaccatcgtggaccagtgcggcctg
gagttcagccagctgatcaagcaggcgtctcgggagcagctgccccggcagctgcagcgg
caagcggtccggcgtcttctgaaagacaacgtggcgcttttgcttcttcttgaggtgaag
aacgaaggagacgcgcgtgcagcggcggcggccgaagaggccgagcgcggccgcaacacg
gagactcggcgatgcgacgtgaaccggagcagcagcgacagtcgcgcgctttctgcttct
gcaacaacgcggtctaggcacgcgtccacagagacatcgtccccaaactcgactgatcct
gtatccagggggcgtgagcagcaggccacaggggccggtgtcgcgagcggaggcggaggc
actctcgggtcaaatcgcgcagagtccgagaacccgagagggagccgagcttccgggctg
gacaaggacgcagaacctgttcggtccaagctgcgggcgaatgctcccgcgtggggagag
acttcccggcttttctttgacacacttgcgagtacccacggacgtgcgggcggcgctcca
tgggggtacgccgcgggctacaccagtgcggacggcaacccctcagcacaccggaaactt
cttctcgtggccaacacacacattgtcgcgaaccctgagtcgaatgacgtgaaaatctgg
caggcgcaaaccctggttgggatgattgagaagtatctcctggcgttccgacctccagcg
tatcgcgattcgccttgtctcacgccggccgtcgttttatgcggcgacttcaacagcact
ccagacagcgctgtctaccagttgttagtgacaggtcgctgcgaccgccaccacatcgac
ctcgcttccgatcggcacggactccttgctgaactgaatcttggccacagtatcccactc
aaatccggctacgcagtgagtaaggcgctgaaggacggcttggatcctcacgacttctat
gctctacgacagtcggagcccgagtttaccaactacactggaaactacacgggctgcttg
gattaccttttcttctgcgacaccatgctcagggttcgggagattctggagcccatcgac
agcaaacagcttttgcgggaagcccgacagctgcagcttctgcatcaagccctgccgagt
cctttgcggccgtcagaccacattccgcttctctgcaagtttgagtggatacagtga
DBGET
integrated database retrieval system
