KEGG   Thioalkalivibrio sulfidiphilus: Tgr7_1353
Entry
Tgr7_1353         CDS       T00840                                 
Name
(GenBank) ribonuclease E
  KO
K08300  ribonuclease E [EC:3.1.26.12]
Organism
tgr  Thioalkalivibrio sulfidiphilus
Pathway
tgr03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:tgr00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Tgr7_1353
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tgr03019]
    Tgr7_1353
   03009 Ribosome biogenesis [BR:tgr03009]
    Tgr7_1353
Enzymes [BR:tgr01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.26  Endoribonucleases producing 5'-phosphomonoesters
    3.1.26.12  ribonuclease E
     Tgr7_1353
Messenger RNA biogenesis [BR:tgr03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     Tgr7_1353
Ribosome biogenesis [BR:tgr03009]
 Prokaryotic type
  rRNA processing factors
   Tgr7_1353
SSDB
Motif
Pfam: RNase_E_G RNase_E_G_Thio S1
Other DBs
NCBI-ProteinID: ACL72438
UniProt: B8GR18
LinkDB
Position
complement(1450167..1452983)
AA seq 938 aa
MKRILINATQPEELRVAMVDGQKLYDLDIEVPSREQKKANVYKAVVTRVEPSLEAAFVNY
GAERHGFLPLKEIARSFLPGAGDEDSPQGSIKDLVKEGMELIVQVEKEERGNKGAALTTF
VSLAGRYLVLMPNNPRAGGVSRRIEGEDRSEIREALSQLEVPQGMGLIARTAGVGRGVEE
LQWDLEYLKTLWAAITEAAEKRKGPFLIYQESNVIIRALRDHLRNDIAEIIVDVPAVYQQ
AQEFMQQVMPNNLRKLKLYEEHVPLFNRYQIESQIEAAFQREVSLPSGGAIVIDHTEALI
SIDVNSARATKGSDIEETALNTNLEAADEIARQLRLRDLGGLIVIDFIDMGPAKNQREVE
NRLRDALEMDRARVQVGRISRFGLLEMSRQRLRPSLGESSQIVCPRCSGHGHIRSVESLA
LSVLRLIEEEAMKDKTGRVLAQLPVDVATFLLNEKRDAVNGIERRHDVMVTLVPTPDMVT
PHFNVRRIRMDEMPEELRGKSSYQMLPEEELPEPITVRPVSAPVERAAVQTIRPATPAPV
SPEPVEAPARAQVPVAQPGFFARIWSSLFAGAPRSEAETEIEESKSRARRSSTGRGGRDA
RDSEAERGGRGRRRSSTRDRRREDAGEGRPRPSQDKPAQERPAPEKPAAEKAPAAEKPAI
EKPAREKPVREASQTADSNAERPETGGEGGGRSRGRRGGRRRRRGGGGGERGADQQRQGD
EGGNGGESRGAAPSGESGQGGERKPAERPRSESDKPQASERGESRAPARESRPAAEQPAA
PSGSTSQSPSQPVSQPQTQSTGQGTGQAATQPSGEAGPKPAPRSEAPSPAPAARPPAAAP
SGQIAPGPAPAPAAPKPVAPAASSPSREAPPSDQARPAMAQGGGESGSRPPAPPAQAPAP
SAVPPAPASAPVSAPTSTDKAAPRESGASEKPKEQTPG
NT seq 2817 nt   +upstreamnt  +downstreamnt
atgaagcgaatcctgatcaacgccacgcagcccgaagagctgcgtgtggccatggtagat
ggccagaaactctacgacctggacatcgaagtcccctcccgggagcagaaaaaggccaac
gtctacaaggccgtcgtcacccgggttgagcccagcctcgaagccgccttcgtcaactat
ggcgccgagcgccatggcttcctccccctaaaggaaatcgcccgcagcttcctgcccggc
gccggcgatgaagacagcccccaggggtccatcaaggacctggtcaaggagggcatggaa
ctcatcgtccaggtggagaaggaagagcgcggcaacaaaggcgcggcgctgaccaccttc
gtgagcctggccggccgctacctggtgctgatgcccaacaacccccgcgccggcggcgtc
tcccggcgcatcgagggcgaggaccgcagcgagatccgcgaggccctgagccagctggaa
gtcccccagggcatgggcctgatcgcccgcaccgccggcgtcggccgtggcgtggaagaa
ctgcagtgggacctggaatacctcaagaccctgtgggccgccatcaccgaggccgccgag
aagcgcaagggtccgttcctgatctaccaggaaagcaacgtcatcatccgcgccctgcgc
gaccacctgcgcaatgacatcgccgagatcatcgtcgatgtcccggcggtctatcagcag
gcccaggaattcatgcagcaggtgatgcccaacaacctgcgcaagctcaagctctacgaa
gagcatgtgcccctgttcaaccgctaccagatcgagagccagatcgaggcggccttccag
cgggaggtctccctgccctccggcggcgcgatcgtcatcgaccacaccgaggccctgatc
tccatcgacgtgaactccgcccgcgccaccaagggtagcgacatcgaggagaccgcgctc
aacaccaacctggaggcggccgacgagatcgcccgccagctgcgcctgcgggatctgggc
ggcctgatcgtcatcgacttcatcgacatgggtcccgccaagaaccagcgggaggtggaa
aaccgcctgcgcgacgcgctcgaaatggaccgcgcccgggtgcaggtgggacgtatctcc
cgcttcggcctgctggagatgtcccgccagcgcctgcgcccctccctgggcgaatccagc
cagatcgtatgcccccgctgcagcggccacggccacatccgcagcgtcgagtccctggcc
ctgtcggtgctgcgcctgatcgaggaagaggccatgaaggacaagaccggccgcgtgctc
gcgcagctgccggtggatgtcgccaccttcctgctcaacgagaagcgtgatgcggtcaac
ggcatcgagcgccgccacgacgtgatggtcaccctggtgcccaccccggacatggtcacg
ccccacttcaacgtgcgccgcatccgcatggacgagatgcccgaggaactgcgcggcaag
agcagctaccagatgctgcccgaggaagaactgcccgagcccatcacggtgcgcccggtc
agcgctccggtggaacgcgccgcggtgcagaccatccgccccgccaccccggcaccggtg
agcccggaacccgtggaggcccccgcacgggcacaggtgcccgtggcccagcccggcttt
ttcgcgcgcatctggagcagcctgtttgccggcgcgccacgcagcgaggccgagaccgaa
atcgaagagagcaagtcccgcgcccggcgcagcagcaccggccgtggcggacgtgatgcc
cgggacagcgaggctgaacggggcggccgtggtcgtcgccgcagcagcacccgggatcgt
cgccgcgaggatgcgggtgaaggccgcccccgccccagccaggataagcccgcgcaggaa
agaccggcccctgagaagcccgctgccgagaaggcaccggcagccgagaagcctgccatc
gaaaaacccgcacgcgagaaacctgtccgtgaggcaagccagaccgctgacagcaacgca
gagcgaccggagaccggcggtgaaggcggtggccgcagccgtgggcgtcgcggtggacgt
cgccgtcgccgcggtggtggtggcggcgagcgcggtgctgaccagcagcgtcagggtgac
gagggcggcaacggcggggaatcccgtggcgccgccccctctggcgaatccggccagggc
ggtgagcgcaagcccgccgagcgtccccgcagcgagtctgacaaaccccaggccagtgaa
cgcggtgaatcccgtgctccggcccgggaaagcaggcctgccgccgagcagcctgcggcc
ccgtcgggttcgaccagccagtccccgtcacaacccgtgagccagccccagacccagagc
acgggccaaggcacaggccaggcagcgacccagccctccggcgaggccggtcccaagccg
gcaccccggagcgaggcaccgtcgcctgcgccggcggccaggcctccggctgcggctcca
agcggccagatcgcccccggcccggcacccgctccggcggcaccgaaaccggtggcgccc
gcggccagcagcccatcccgtgaggccccgccctcggaccaggcgcgtcccgctatggcc
cagggcggcggtgaatccggcagccggccgcccgcacccccggctcaggcgcccgcgcct
tcagccgtgcccccggcaccggcatccgcaccggtgtctgcgcccacaagcaccgacaag
gcagcgccccgggaatcgggcgcgtcggagaagcccaaggagcagactccgggctga

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