Thioalkalivibrio sulfidiphilus: Tgr7_1353
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Entry
Tgr7_1353 CDS
T00840
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
tgr
Thioalkalivibrio sulfidiphilus
Pathway
tgr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tgr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Tgr7_1353
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tgr03019
]
Tgr7_1353
03009 Ribosome biogenesis [BR:
tgr03009
]
Tgr7_1353
Enzymes [BR:
tgr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
Tgr7_1353
Messenger RNA biogenesis [BR:
tgr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Tgr7_1353
Ribosome biogenesis [BR:
tgr03009
]
Prokaryotic type
rRNA processing factors
Tgr7_1353
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
ACL72438
UniProt:
B8GR18
LinkDB
All DBs
Position
complement(1450167..1452983)
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AA seq
938 aa
AA seq
DB search
MKRILINATQPEELRVAMVDGQKLYDLDIEVPSREQKKANVYKAVVTRVEPSLEAAFVNY
GAERHGFLPLKEIARSFLPGAGDEDSPQGSIKDLVKEGMELIVQVEKEERGNKGAALTTF
VSLAGRYLVLMPNNPRAGGVSRRIEGEDRSEIREALSQLEVPQGMGLIARTAGVGRGVEE
LQWDLEYLKTLWAAITEAAEKRKGPFLIYQESNVIIRALRDHLRNDIAEIIVDVPAVYQQ
AQEFMQQVMPNNLRKLKLYEEHVPLFNRYQIESQIEAAFQREVSLPSGGAIVIDHTEALI
SIDVNSARATKGSDIEETALNTNLEAADEIARQLRLRDLGGLIVIDFIDMGPAKNQREVE
NRLRDALEMDRARVQVGRISRFGLLEMSRQRLRPSLGESSQIVCPRCSGHGHIRSVESLA
LSVLRLIEEEAMKDKTGRVLAQLPVDVATFLLNEKRDAVNGIERRHDVMVTLVPTPDMVT
PHFNVRRIRMDEMPEELRGKSSYQMLPEEELPEPITVRPVSAPVERAAVQTIRPATPAPV
SPEPVEAPARAQVPVAQPGFFARIWSSLFAGAPRSEAETEIEESKSRARRSSTGRGGRDA
RDSEAERGGRGRRRSSTRDRRREDAGEGRPRPSQDKPAQERPAPEKPAAEKAPAAEKPAI
EKPAREKPVREASQTADSNAERPETGGEGGGRSRGRRGGRRRRRGGGGGERGADQQRQGD
EGGNGGESRGAAPSGESGQGGERKPAERPRSESDKPQASERGESRAPARESRPAAEQPAA
PSGSTSQSPSQPVSQPQTQSTGQGTGQAATQPSGEAGPKPAPRSEAPSPAPAARPPAAAP
SGQIAPGPAPAPAAPKPVAPAASSPSREAPPSDQARPAMAQGGGESGSRPPAPPAQAPAP
SAVPPAPASAPVSAPTSTDKAAPRESGASEKPKEQTPG
NT seq
2817 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgaatcctgatcaacgccacgcagcccgaagagctgcgtgtggccatggtagat
ggccagaaactctacgacctggacatcgaagtcccctcccgggagcagaaaaaggccaac
gtctacaaggccgtcgtcacccgggttgagcccagcctcgaagccgccttcgtcaactat
ggcgccgagcgccatggcttcctccccctaaaggaaatcgcccgcagcttcctgcccggc
gccggcgatgaagacagcccccaggggtccatcaaggacctggtcaaggagggcatggaa
ctcatcgtccaggtggagaaggaagagcgcggcaacaaaggcgcggcgctgaccaccttc
gtgagcctggccggccgctacctggtgctgatgcccaacaacccccgcgccggcggcgtc
tcccggcgcatcgagggcgaggaccgcagcgagatccgcgaggccctgagccagctggaa
gtcccccagggcatgggcctgatcgcccgcaccgccggcgtcggccgtggcgtggaagaa
ctgcagtgggacctggaatacctcaagaccctgtgggccgccatcaccgaggccgccgag
aagcgcaagggtccgttcctgatctaccaggaaagcaacgtcatcatccgcgccctgcgc
gaccacctgcgcaatgacatcgccgagatcatcgtcgatgtcccggcggtctatcagcag
gcccaggaattcatgcagcaggtgatgcccaacaacctgcgcaagctcaagctctacgaa
gagcatgtgcccctgttcaaccgctaccagatcgagagccagatcgaggcggccttccag
cgggaggtctccctgccctccggcggcgcgatcgtcatcgaccacaccgaggccctgatc
tccatcgacgtgaactccgcccgcgccaccaagggtagcgacatcgaggagaccgcgctc
aacaccaacctggaggcggccgacgagatcgcccgccagctgcgcctgcgggatctgggc
ggcctgatcgtcatcgacttcatcgacatgggtcccgccaagaaccagcgggaggtggaa
aaccgcctgcgcgacgcgctcgaaatggaccgcgcccgggtgcaggtgggacgtatctcc
cgcttcggcctgctggagatgtcccgccagcgcctgcgcccctccctgggcgaatccagc
cagatcgtatgcccccgctgcagcggccacggccacatccgcagcgtcgagtccctggcc
ctgtcggtgctgcgcctgatcgaggaagaggccatgaaggacaagaccggccgcgtgctc
gcgcagctgccggtggatgtcgccaccttcctgctcaacgagaagcgtgatgcggtcaac
ggcatcgagcgccgccacgacgtgatggtcaccctggtgcccaccccggacatggtcacg
ccccacttcaacgtgcgccgcatccgcatggacgagatgcccgaggaactgcgcggcaag
agcagctaccagatgctgcccgaggaagaactgcccgagcccatcacggtgcgcccggtc
agcgctccggtggaacgcgccgcggtgcagaccatccgccccgccaccccggcaccggtg
agcccggaacccgtggaggcccccgcacgggcacaggtgcccgtggcccagcccggcttt
ttcgcgcgcatctggagcagcctgtttgccggcgcgccacgcagcgaggccgagaccgaa
atcgaagagagcaagtcccgcgcccggcgcagcagcaccggccgtggcggacgtgatgcc
cgggacagcgaggctgaacggggcggccgtggtcgtcgccgcagcagcacccgggatcgt
cgccgcgaggatgcgggtgaaggccgcccccgccccagccaggataagcccgcgcaggaa
agaccggcccctgagaagcccgctgccgagaaggcaccggcagccgagaagcctgccatc
gaaaaacccgcacgcgagaaacctgtccgtgaggcaagccagaccgctgacagcaacgca
gagcgaccggagaccggcggtgaaggcggtggccgcagccgtgggcgtcgcggtggacgt
cgccgtcgccgcggtggtggtggcggcgagcgcggtgctgaccagcagcgtcagggtgac
gagggcggcaacggcggggaatcccgtggcgccgccccctctggcgaatccggccagggc
ggtgagcgcaagcccgccgagcgtccccgcagcgagtctgacaaaccccaggccagtgaa
cgcggtgaatcccgtgctccggcccgggaaagcaggcctgccgccgagcagcctgcggcc
ccgtcgggttcgaccagccagtccccgtcacaacccgtgagccagccccagacccagagc
acgggccaaggcacaggccaggcagcgacccagccctccggcgaggccggtcccaagccg
gcaccccggagcgaggcaccgtcgcctgcgccggcggccaggcctccggctgcggctcca
agcggccagatcgcccccggcccggcacccgctccggcggcaccgaaaccggtggcgccc
gcggccagcagcccatcccgtgaggccccgccctcggaccaggcgcgtcccgctatggcc
cagggcggcggtgaatccggcagccggccgcccgcacccccggctcaggcgcccgcgcct
tcagccgtgcccccggcaccggcatccgcaccggtgtctgcgcccacaagcaccgacaag
gcagcgccccgggaatcgggcgcgtcggagaagcccaaggagcagactccgggctga
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