KEGG   Taeniopygia guttata (zebra finch): 100220473Help
Entry
100220473         CDS       T01082                                 

Gene name
LIG3
Definition
(RefSeq) DNA ligase 3
  KO
K10776  DNA ligase 3 [EC:6.5.1.1]
Organism
tgu  Taeniopygia guttata (zebra finch)
Pathway
tgu03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:tgu00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    100220473 (LIG3)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:tgu03400]
    100220473 (LIG3)
Enzymes [BR:tgu01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     100220473 (LIG3)
DNA repair and recombination proteins [BR:tgu03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Short Patch-BER factors
     100220473 (LIG3)
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N LIG3_BRCT zf-PARP DNA_ligase_A_C BRCT_2 RNA_ligase Synaptonemal_3 CDC45
Motif
Other DBs
NCBI-GeneID: 100220473
NCBI-ProteinID: XP_004177044
LinkDB All DBs
Position
19
AA seq 896 aa AA seqDB search
MAEQRYCVDYAKRGTAGCKKCKEKIVKGMVRIGKIVPNPFTESGGDMKEWYHVKCIFEKL
DKARATTKKIEDITDLEGWEELQDEEKDTINKYIAEANSKTGGTPKKKVIVQAKLTATGQ
LTTKDPPKKFSGFSAKPKNSEDAPANPAQKPSLSAARCDPKHKDCLLREFRKLCAMVAEK
PSYNVKTQIIQDFLRKGSAGDGFHGDVYLTIKMLLPGVIKIVYNLNDKQIVKLFSRIFNC
NQEEMVRDLEQGDVSETIRIFFEQSKTCPPAAKSLLTIQEVDEFLIQLSKLTKEDDQQSV
LQQISRRCTGNDLKCIIRLIKHDLKMNAGAKHVLDALDPNAYEAFKASRNLQDVVERVLQ
NQQEAEKVPGLKRTLSVQASLMTPVQPMLAEACKSIEYAMKKCPNGMYAEIKYDGERVQV
HKNGDHFSYFSRSLKPVLPHKVAHFKDFIPQAFPGGQSMILDSEVLLIDNKTGKPLPFGT
LGVHKKAAFQDANVCLFVFDCIYFNDISLMDRPLCERRKFLHDNMVEIPNXDPVLRDETC
HKSCRSGRHDHRVIREGLEGLVLKDIKGNYEPGKRHWLKVKKDYLNEGAMADTADLVVLG
AFYGQGSKGGMMSIFLMGCYDPKTEKWCTVTKCAGGHDDATLARLQTELDMVKISKDPSK
IPRWLKINKIYYPDFIVPDPKKAPVWEITGAEFSKAEAHTADGISIRFPRCTRIRDDKDW
QTATNLQQLKELYQLSKEKADFSVTAGEEEESTAGSSGENDGNSRSSTPHSSIKSPPSKS
PAKAQKEEDSKGIIGSPQKSEEKRGEKRKASEMEDNGKKPLLDIFTGVRLYLAPSVKDFD
RIRRYFIAFDGDLVCEGDTASATHVLGDIADSPGAQRVTARWIWECIRKRRLLAPC
NT seq 2691 nt NT seq  +upstreamnt  +downstreamnt
atggcagagcagcggtactgcgtggactatgccaagcgaggcaccgcgggctgcaagaag
tgcaaggagaagatcgtgaaggggatggtgcgcatcgggaagatcgttcccaatcctttc
accgagtccggaggggacatgaaggagtggtaccatgtcaagtgcatctttgagaagctg
gacaaagcccgggccactactaagaaaattgaagatatcacagatttggaggggtgggaa
gagctgcaggatgaggagaaagatacaatcaacaagtacatcgcagaagccaattccaag
actggaggtaccccaaagaaaaaggtgatagtgcaggcaaagctcactgccacgggacag
ctgaccacaaaagatccaccaaagaaattctctggattcagtgctaagccaaagaattca
gaagatgcccctgcaaaccctgcccagaagcccagcctgtctgcagccaggtgtgatccc
aagcacaaggactgcctgctgcgggaattccgcaagctctgcgccatggtggctgaaaag
ccaagctacaatgtgaaaactcagatcatccaggacttcctcaggaagggatctgcagga
gatggttttcatggtgatgtatacctgaccattaagatgctgttaccaggtgtcattaaa
atagtttacaacttgaatgataagcagattgtaaagctgttcagcaggatttttaactgc
aaccaggaagaaatggtccgggacctggagcagggagatgtttctgagaccatacggatc
ttcttcgagcagagcaagacctgtcccccagcagccaagagcctcctgaccatccaggag
gtcgatgagttcctcatccagctgtccaagctcaccaaggaggatgaccagcagagtgtc
ctgcagcagatcagtcgcaggtgtacaggcaacgacctgaagtgcatcatcaggctaatt
aagcatgacttgaaaatgaatgctggagcaaagcacgtgttggatgctctggaccccaac
gcctacgaggctttcaaggcctcgcggaacctgcaggacgtggtggagcgggtgctgcag
aaccagcaggaggcagagaaggtgccggggctgaagaggaccctgagcgtgcaggcctcg
ctcatgaccccagtgcagcccatgctggctgaggcctgcaagtccatcgagtatgccatg
aagaagtgtcccaacgggatgtacgccgagatcaagtacgacggtgagcgcgtgcaggtg
cacaagaacggggatcacttcagctacttcagcaggagcctcaagcctgtgctcccccac
aaagtagcccattttaaggatttcatcccccaggctttccctggtgggcaaagtatgatt
ctggattcagaagttctcctgattgacaataaaactggcaagccacttccttttgggact
cttggtgtgcacaagaaagctgctttccaggatgccaacgtttgcctctttgtgtttgac
tgcatctacttcaatgacatcagcctgatggacaggcccctgtgtgaacggcgcaagttc
ctccacgacaacatggtggagatccccaacnaggatcctgttctcagagatgaaacatgt
cacaaaagctgcagatctggcagacatgatcaccgggtcatccgggaggggctggaaggg
ctggtgctgaaggatataaagggtaattacgagccagggaaacgccactggctgaaggtg
aagaaggattatctcaacgagggagcaatggctgacactgctgacctggtggtgctgggg
gctttctatggacaaggcagtaaaggtgggatgatgtccatcttcctcatgggctgctac
gaccccaagactgagaagtggtgcacggtgaccaagtgcgctggtggccacgacgatgcc
accctggcacgtctgcagacggagttggacatggtgaagatcagcaaggatcctagtaaa
attccaaggtggctaaaaattaacaaaatctactacccagacttcattgtcccagatcca
aagaaagcgccggtgtgggagatcacaggggccgagttctccaaggcggaggcgcacact
gcggacgggatctccatccgcttcccgcgctgcacccgcatccgcgacgacaaggactgg
cagactgccaccaacctgcagcagctcaaggagctgtaccagctctccaaggagaaggct
gatttcagtgttacagctggggaggaagaggaatccacagctggcagcagtggagagaat
gatgggaattccaggtcttccacacctcacagcagtattaagagtcccccaagcaagtcg
cctgcaaaagcccagaaggaagaagacagcaaaggaatcattggatcccctcaaaaatcc
gaggagaaacgaggggagaagagaaaagcatctgagatggaggacaacgggaagaagccg
ctgctggacattttcacgggggtgaggctctacctggcgccctcggtgaaggactttgac
cgaatccgccgctacttcatcgccttcgacggggacctggtgtgcgagggggacacggcc
tcggccacccacgtgcttggggacattgctgacagccccggggcccagcgggtgactgcc
aggtggatctgggagtgcatccgcaagcgcaggctgctggccccgtgctag

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