Taeniopygia guttata (zebra finch): 100220510
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Entry
100220510 CDS
T01082
Symbol
RFC5
Name
(RefSeq) replication factor C subunit 5 isoform X2
KO
K10756
replication factor C subunit 3/5
Organism
tgu
Taeniopygia guttata (zebra finch)
Pathway
tgu03030
DNA replication
tgu03410
Base excision repair
tgu03420
Nucleotide excision repair
tgu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tgu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
100220510 (RFC5)
03410 Base excision repair
100220510 (RFC5)
03420 Nucleotide excision repair
100220510 (RFC5)
03430 Mismatch repair
100220510 (RFC5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tgu03032
]
100220510 (RFC5)
03036 Chromosome and associated proteins [BR:
tgu03036
]
100220510 (RFC5)
03400 DNA repair and recombination proteins [BR:
tgu03400
]
100220510 (RFC5)
DNA replication proteins [BR:
tgu03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
100220510 (RFC5)
DNA Replication Termination Factors
ELG1-RFC complex
100220510 (RFC5)
Chromosome and associated proteins [BR:
tgu03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
100220510 (RFC5)
DNA repair and recombination proteins [BR:
tgu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
100220510 (RFC5)
Check point factors
HRAD17(Rad24)-RFC complex
100220510 (RFC5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac_C
AAA
DNA_pol3_delta2
Rad17
AAA_22
AAA_16
AAA_11
AAA_24
AAA_assoc_2
DEAD
AAA_14
ResIII
RuvB_N
DUF815
DNA_pol3_delta
AAA_5
AAA_19
AAA_30
PhoH
AAA_7
TniB
TIP49
ATPase_2
nSTAND3
AAA_25
Gp44_lid
Mg_chelatase
Thioredoxin_6
bpMoxR
AAA_3
Hydantoinase_B
AAA_18
Motif
Other DBs
NCBI-GeneID:
100220510
NCBI-ProteinID:
XP_002188696
LinkDB
All DBs
Position
15:complement(1759893..1762973)
Genome browser
AA seq
329 aa
AA seq
DB search
MAPAGSANLPWVEKYRPQALSELVSHRDILSTVQRFISEDRLPHLLLYGPPGTGKTSTIL
ACARQLYREREFSSMVLELNASDDRGIDIVRGPILSFASTRTIFKKGFKLVILDEADAMT
QDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLQHVIQ
EEGVDVTEDGMKALVTLSSGDMRRALNILQSTSMAFGKVTEENVYTCTGHPLKSDIANIL
DWMLNQDFSTAYRKIMELKTLKGLALQDILTEIHLFVHRVDFPPSIRIQLLIKLADIEYR
LAAGTSEKIQLSSLIAAFQVTRDLVVAEA
NT seq
990 nt
NT seq
+upstream
nt +downstream
nt
atggcgccggcgggcagcgcgaacctgccgtgggtggagaagtaccgtccgcaggcgctg
tccgagctggtgtctcaccgggacatcctcagcaccgtgcaacgcttcatcagcgaggac
cggctcccccatctgctcctctatgggccgcccggtaccgggaagacatccaccatcctg
gcctgtgcccggcagctctaccgggagcgggagttcagctccatggtgctggagctcaac
gcctccgatgaccggggcatcgacatcgtccgagggcccatcctgagcttcgccagcacc
aggaccatctttaagaaaggcttcaagctcgtcatcctggatgaagccgatgccatgacc
caggatgctcagaacgccctgaggagagtgatcgagaagttcacagaaaacacccggttc
tgcctcatctgcaactacctgtccaagatcattcccgccctgcaatcccgctgcacccgc
ttccgcttcggccccctgaccccggagctgatggtgccgcggctgcagcacgtcatccag
gaggagggggtggatgtgaccgaggacgggatgaaggctctggtgaccctctcgagcggg
gacatgcgcagagccctcaacatcttgcagagcacctccatggcctttgggaaggtgaca
gaggagaacgtttacacctgcacgggacatcccctcaagtctgacatcgccaacatcctc
gactggatgctgaaccaggatttttccactgcctaccgcaaaatcatggagctgaagacg
ctgaagggcctggccctgcaggacatcctcactgagatccatctctttgtgcacagagtc
gacttccccccctccatccgcatccagctgctgatcaagctggcagacatcgagtaccgc
ctggctgctggcaccagcgagaagatccagctgagctccctcatcgccgcattccaggtc
accagggacctggtggtggccgaagcctga
DBGET
integrated database retrieval system
